miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00645;MIR169_2;AASG02009044.1/9839-9706 3988:Ricinus communis
          (castor bean)
          Length = 134

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  cagccaaggatgacttgccgactg 24
          ||||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgactg 35





>RF00645;MIR169_2;AARH01000003.1/78094-77924 3694:Populus
          trichocarpa
          Length = 171

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  cagccaaggatgacttgccgact 23
          |||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgact 34





>RF00645;MIR169_2;AASG02001387.1/35857-35778 3988:Ricinus communis
          (castor bean)
          Length = 80

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  cagccaaggatgacttgccgact 23
          |||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgact 34





>RF00645;MIR169_2;CAAP02000269.1/151468-151586 29760:Vitis
          vinifera
          Length = 119

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  cagccaaggatgacttgccgact 23
          |||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgact 34





>RF00645;MIR169_2;AARH01007968.1/101578-101471 3694:Populus
          trichocarpa
          Length = 108

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  cagccaaggatgacttgccgac 22
          ||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgac 33





>RF00645;MIR169_2;AARH01005671.1/55685-55803 3694:Populus
          trichocarpa
          Length = 119

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  cagccaaggatgacttgccgac 22
          ||||||||||||||||||||||
Sbjct: 12 cagccaaggatgacttgccgac 33