miRNEST 2.0, an integrative microRNA resource :: BLAST
>48428_cpt-miR408:pmrd
Length = 100
Score = 184 bits (93), Expect = 8e-48
Identities = 96/97 (98%)
Strand = Plus / Plus
Query: 1 agacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgttttg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agacaaaagacggggaacaggcagagcatggatggaaccattaacaggttctctgttttg 60
Query: 61 gctcctcccatgcgctgcctcttccctggctctctgc 97
||||||||||||| |||||||||||||||||||||||
Sbjct: 61 gctcctcccatgcactgcctcttccctggctctctgc 97
>51762_ptc-miR408:pmrd
Length = 105
Score = 79.8 bits (40), Expect = 3e-16
Identities = 77/87 (88%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 7 aagacggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctc 64
|||||||||||||||||||||||||||||| | | |||||| || || |||||||||||
Sbjct: 12 aagacggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctc 70
Query: 65 ctcccatgcgctgcctcttccctggct 91
||||||| |||||||||||||||||
Sbjct: 71 tacccatgcactgcctcttccctggct 97
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 65.9 bits (33), Expect = 5e-12
Identities = 70/80 (87%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 11 cggggaacaggcagagcatggatggaaccattaacag--gttctctgttttggctcctcc 68
|||||||||||||||||||||||||| | | |||||| || || ||||||||||| ||
Sbjct: 1 cggggaacaggcagagcatggatggagctactaacagaagtact-tgttttggctctacc 59
Query: 69 catgcgctgcctcttccctg 88
||||| ||||||||||||||
Sbjct: 60 catgcactgcctcttccctg 79
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 7e-08
Identities = 38/42 (90%)
Strand = Plus / Minus
Query: 51 ctctgttttggctcctcccatgcgctgcctcttccctggctc 92
|||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 45 ctctgttttgtctctacccatgcactgcctcttccctggctc 4
>47031_ath-miR408:pmrd
Length = 218
Score = 52.0 bits (26), Expect = 7e-08
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 51 ctctgttttggctcctcccatgcgctgcctcttccctggctc 92
|||||||||| ||| ||||||| ||||||||||||||||||
Sbjct: 101 ctctgttttgtctctacccatgcactgcctcttccctggctc 142
>54892_vvi-miR408:pmrd
Length = 107
Score = 50.1 bits (25), Expect = 3e-07
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 53 ctgttttggctcctcccatgcgctgcctcttccctggctct 93
||||||| |||| ||||||| |||||||||||||||||||
Sbjct: 60 ctgtttttgctctacccatgcactgcctcttccctggctct 100
Score = 42.1 bits (21), Expect = 7e-05
Identities = 36/41 (87%)
Strand = Plus / Plus
Query: 7 aagacggggaacaggcagagcatggatggaaccattaacag 47
|||||||||| ||| || ||||||||||||| ||||||||
Sbjct: 7 aagacggggacgaggtagtgcatggatggaactattaacag 47
>54389_rco-miR408:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 1e-06
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 52 tctgttttggctcctcccatgcgctgcctcttccctggct 91
||||||||||||| ||| ||| |||||||||||||||||
Sbjct: 72 tctgttttggctctacccctgcactgcctcttccctggct 111
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 6 aaagacggggaacaggcagagcatggatgg 35
|||||| |||||||||||| ||||||||||
Sbjct: 24 aaagactgggaacaggcagtgcatggatgg 53
>54648_sof-miR408c:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 tcctcccatgcgctgcctcttccctggctc 92
||||||| ||| ||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269
>54647_sof-miR408b:pmrd
Length = 286
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 tcctcccatgcgctgcctcttccctggctc 92
||||||| ||| ||||||||||||||||||
Sbjct: 240 tcctcccctgcactgcctcttccctggctc 269
>54646_sof-miR408a:pmrd
Length = 283
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 63 tcctcccatgcgctgcctcttccctggctc 92
||||||| ||| ||||||||||||||||||
Sbjct: 237 tcctcccctgcactgcctcttccctggctc 266
>51347_ppe-miR408:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 7 aagacggggaacaggcagagcatggatgga 36
||||| ||||||||| ||||||||||||||
Sbjct: 7 aagacagggaacaggtagagcatggatgga 36
>55104_zma-miR408:pmrd
Length = 191
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 64 cctcccatgcgctgcctcttccctggctc 92
|||||| ||| ||||||||||||||||||
Sbjct: 146 cctcccctgcactgcctcttccctggctc 174
>54499_sbi-miR408:pmrd
Length = 205
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 63 tcctcccatgcgctgcctcttccctggct 91
||||||| ||| |||||||||||||||||
Sbjct: 177 tcctcccctgcactgcctcttccctggct 205
>48975_osa-miR408:pmrd
Length = 213
Score = 42.1 bits (21), Expect = 7e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 64 cctcccatgcgctgcctcttccctggctc 92
|||||| ||| ||||||||||||||||||
Sbjct: 147 cctcccctgcactgcctcttccctggctc 175
>46892_aqc-miR408:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 68 ccatgcgctgcctcttccctggct 91
|||||| |||||||||||||||||
Sbjct: 24 ccatgcactgcctcttccctggct 1
