miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 97.6 bits (49), Expect = 5e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagctatgg 60
|||||||||||||||||||| ||||| ||||| ||||| |||||||||||| ||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70
Query: 61 atcccacag 69
|||||||||
Sbjct: 71 atcccacag 79
Score = 54.0 bits (27), Expect = 7e-07
Identities = 45/51 (88%)
Strand = Plus / Plus
Query: 125 ggagcttcattacctttccacagatccttatttggattgaagggagctcta 175
|||||||||||||||| |||||||| |||||||||||||||||||||
Sbjct: 132 ggagcttcattaccttgtattagatccttgtttggattgaagggagctcta 182
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 87.7 bits (44), Expect = 5e-17
Identities = 59/64 (92%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagctatgg 60
|||||||||||||||||||| ||||| ||||| ||||| |||| ||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70
Query: 61 atcc 64
||||
Sbjct: 71 atcc 74
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 146 agatccttatttggattgaagggagctcta 175
|||||| | |||||||||||||||||||||
Sbjct: 145 agatccctttttggattgaagggagctcta 174
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 81.8 bits (41), Expect = 3e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagctatgg 60
|||||||||||||||||||| |||||||||| ||||| |||||||||||| | |||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 70
Query: 61 atcccacag 69
|||||||||
Sbjct: 71 atcccacag 79
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 146 agatccttatttggattgaagggagctcta 175
|||||||| |||||||||||||||||||||
Sbjct: 153 agatccttgtttggattgaagggagctcta 182
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 61.9 bits (31), Expect = 3e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagctatggat 62
|||||||||||||||||| ||||| | ||| |||| ||||||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 63 cccacag 69
||||||
Sbjct: 73 tccacag 79
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 148 atccttatttggattgaagggagctcta 175
|||||| |||||||||||||||||||||
Sbjct: 155 atccttgtttggattgaagggagctcta 182
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 61.9 bits (31), Expect = 3e-09
Identities = 58/67 (86%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaacagagggtcttggtgggtggattgagctgctaagctatggat 62
|||||||||||||||||| ||| | || || ||||| ||| |||||||| ||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 63 cccacag 69
|||||||
Sbjct: 61 cccacag 67
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaacaga 24
||||||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaacaga 34
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 agctgctaagctatggatccca 66
||||||||||||||||||||||
Sbjct: 56 agctgctaagctatggatccca 77
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana
(thale cress)
Length = 204
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 45 agctgctaagctatggatccca 66
||||||||||||||||||||||
Sbjct: 56 agctgctaagctatggatccca 77
