miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 188 bits (95), Expect = 2e-47
Identities = 161/181 (88%), Gaps = 9/181 (4%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatgg 60
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70
Query: 61 atcccacagccctatctcataataaagactctagtcttcttggataggcttgtggcttgc 120
||||||||||||||| | | ||| | || | |||||||||||||||||||||
Sbjct: 71 atcccacagccctat----aagcagagattata---attttggataggcttgtggcttgc 123
Query: 121 atatctcaggagcttcattacctcttatgttagatccttgtttggattgaagggagctct 180
||||||||||||||||||||| ||| | |||||||||||||||||||||||||||||||
Sbjct: 124 atatctcaggagcttcattac--cttgtattagatccttgtttggattgaagggagctct 181
Query: 181 a 181
|
Sbjct: 182 a 182
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 129 bits (65), Expect = 1e-29
Identities = 155/182 (85%), Gaps = 11/182 (6%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatgg 60
|||||||||||||||||||||||||| |||| ||||||||||||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 70
Query: 61 atcccacagccctatctcat-aataaagactctagtcttcttggataggcttgtggcttg 119
|||||||||||||||| | | ||| | | | ||||||||||||||||||||
Sbjct: 71 atcccacagccctatcccgtcaatgggg------ggc--attggataggcttgtggcttg 122
Query: 120 catatctcaggagcttcattacctcttatgttagatccttgtttggattgaagggagctc 179
||||||||||||||| ||||| || | ||||||||||||||||||||||||||||||
Sbjct: 123 catatctcaggagctgcatta--tccaagtttagatccttgtttggattgaagggagctc 180
Query: 180 ta 181
||
Sbjct: 181 ta 182
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 107 bits (54), Expect = 5e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 62
|||||||||||||||||||||| | || |||||||||||| |||||||||||||||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 63 cccacagccctatc 76
||||||||||||||
Sbjct: 61 cccacagccctatc 74
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 105 bits (53), Expect = 2e-22
Identities = 72/77 (93%), Gaps = 1/77 (1%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatgg 60
|||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatgg 70
Query: 61 atcccacagccctatct 77
|| |||||| |||||||
Sbjct: 71 at-ccacagtcctatct 86
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 103 bits (52), Expect = 8e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatggat 62
|||||||||||||||||||||||||| |||| |||| ||||||||||| |||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72
Query: 63 cccacagcccta 74
|||||||||||
Sbjct: 73 tccacagcccta 84
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 81.8 bits (41), Expect = 3e-15
Identities = 68/77 (88%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaggatcttgctgggtagattgagctgctgagctatgg 60
|||||||||||||||||||| ||| ||||| | || |||||||||||||||| ||||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatgg 70
Query: 61 atcccacagccctatct 77
|| || |||||||||||
Sbjct: 71 attcctcagccctatct 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 148 tgttagatccttgtttggattgaagggagctcta 181
|||| |||| || |||||||||||||||||||||
Sbjct: 155 tgtttgatcattttttggattgaagggagctcta 188
