miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51346_ppe-miR171:pmrd
Length = 97
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 tgatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tgatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaattt 67
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 68 gattgagccgtgccaatatca 88
>51345_ppe-miR170:pmrd
Length = 97
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 1 tgatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaattt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tgatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaattt 67
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 68 gattgagccgtgccaatatca 88
>54836_vvi-miR171i:pmrd
Length = 103
Score = 73.8 bits (37), Expect = 2e-14
Identities = 70/80 (87%), Gaps = 2/80 (2%)
Strand = Plus / Plus
Query: 2 gatgttggcgtggctcaatcaaatcaaacttctcaactgtttattgggtcctttaatttg 61
|||||||| |||||||||||||||||| || ||| ||| |||||||||||||| ||
Sbjct: 13 gatgttggaatggctcaatcaaatcaaatctcccaagggtt--ttgggtcctttaatctg 70
Query: 62 attgagccgtgccaatatca 81
||||||||||||||||||||
Sbjct: 71 attgagccgtgccaatatca 90
>46877_aqc-miR171b:pmrd
Length = 77
Score = 67.9 bits (34), Expect = 1e-12
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 44 attgggtcctttaatttgattgagccgtgccaatatca 81
||||||||||||||| ||||||||||||||||||||||
Sbjct: 39 attgggtcctttaatctgattgagccgtgccaatatca 76
>54828_vvi-miR171a:pmrd
Length = 99
Score = 58.0 bits (29), Expect = 1e-09
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 49 gtcctttaatttgattgagccgtgccaatatca 81
|||||||||| ||||||||||||||||||||||
Sbjct: 57 gtcctttaatctgattgagccgtgccaatatca 89
>51691_ptc-miR171h:pmrd
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatca 81
||||||| |||||| ||||||||||||||||||||||
Sbjct: 56 ttgggtcgtttaatctgattgagccgtgccaatatca 92
>51690_ptc-miR171g:pmrd
Length = 100
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatca 81
||||||| |||||| ||||||||||||||||||||||
Sbjct: 56 ttgggtcttttaatctgattgagccgtgccaatatca 92
>46979_ath-miR171c:pmrd
Length = 116
Score = 50.1 bits (25), Expect = 2e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 57 atttgattgagccgtgccaatatca 81
|||||||||||||||||||||||||
Sbjct: 84 atttgattgagccgtgccaatatca 108
>55029_zma-miR171b:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatca 83
>54831_vvi-miR171d:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatca 88
>54830_vvi-miR171c:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatca 91
>54462_sbi-miR171k:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatca 83
>54452_sbi-miR171a:pmrd
Length = 161
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 120 tttgattgagccgtgccaatatca 143
>52725_ptc-miRf10903-akr:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatc 80
|||||| |||| || |||||||||||||||||||||
Sbjct: 45 ttgggttctttcatctgattgagccgtgccaatatc 80
>51882_ptc-miRf10060-akr:pmrd
Length = 87
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 61 tttgattgagccgtgccaatatca 84
>51692_ptc-miR171i:pmrd
Length = 129
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 57 atttgattgagccgtgccaatatc 80
||||||||||||||||||||||||
Sbjct: 97 atttgattgagccgtgccaatatc 120
>51688_ptc-miR171e:pmrd
Length = 94
Score = 48.1 bits (24), Expect = 9e-07
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatc 80
|||||| |||| || |||||||||||||||||||||
Sbjct: 50 ttgggttctttcatctgattgagccgtgccaatatc 85
>51685_ptc-miR171b:pmrd
Length = 103
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 69 tttgattgagccgtgccaatatca 92
>51684_ptc-miR171a:pmrd
Length = 104
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatca 93
>48897_osa-miR171c:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90
>48896_osa-miR171b:pmrd
Length = 100
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatca 91
>48403_bra-miR171a:pmrd
Length = 85
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 60 tttgattgagccgtgccaatatca 83
>48386_bol-miR171a:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89
>48367_bna-miR171e:pmrd
Length = 92
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 65 tttgattgagccgtgccaatatca 88
>48366_bna-miR171d:pmrd
Length = 96
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89
>48312_bdi-miR171c:pmrd
Length = 86
Score = 48.1 bits (24), Expect = 9e-07
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatca 81
||||||||||||||||||||||||
Sbjct: 62 tttgattgagccgtgccaatatca 85
>55036_zma-miR171i:pmrd
Length = 104
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 ttgattgagccgtgccaatatca 81
|||||||||||||||||||||||
Sbjct: 64 ttgattgagccgtgccaatatca 86
>55033_zma-miR171f:pmrd
Length = 155
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 59 ttgattgagccgtgccaatatca 81
|||||||||||||||||||||||
Sbjct: 114 ttgattgagccgtgccaatatca 136
>54551_sly-miR171a:pmrd
Length = 122
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 85 tttgattgagccgtgccaatatc 107
>48723_mtr-miR171g:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>48722_mtr-miR171d:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>46880_aqc-miR171e:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 23 tttgattgagccgtgccaatatc 1
>46879_aqc-miR171d:pmrd
Length = 106
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 82 tttgattgagccgtgccaatatc 104
>46876_aqc-miR171a:pmrd
Length = 102
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 tttgattgagccgtgccaatatc 80
|||||||||||||||||||||||
Sbjct: 78 tttgattgagccgtgccaatatc 100
>55039_zma-miR171m:pmrd
Length = 113
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttgattgagccgtgccaatatc 80
||||||||||||||||||||||
Sbjct: 92 ttgattgagccgtgccaatatc 113
>55037_zma-miR171j:pmrd
Length = 129
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatca 81
||||||||||||||||||||||
Sbjct: 90 tgattgagccgtgccaatatca 111
>55024_zma-miR170m:pmrd
Length = 115
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 59 ttgattgagccgtgccaatatc 80
||||||||||||||||||||||
Sbjct: 94 ttgattgagccgtgccaatatc 115
>54453_sbi-miR171b:pmrd
Length = 132
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatca 81
||||||||||||||||||||||
Sbjct: 93 tgattgagccgtgccaatatca 114
>49676_osa-miRf10461-akr:pmrd
Length = 123
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatca 81
||||||||||||||||||||||
Sbjct: 95 tgattgagccgtgccaatatca 116
>48900_osa-miR171f:pmrd
Length = 127
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatca 81
||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatca 118
>55032_zma-miR171e:pmrd
Length = 126
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>55031_zma-miR171d:pmrd
Length = 121
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 82 tgattgagccgtgccaatatc 102
>54680_tae-miR170b:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 74 tgattgagccgtgccaatatc 94
>54579_smo-miR171a:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 103 gattgagccgtgccaatatca 123
>54552_sly-miR171b:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 atttgattgagccgtgccaatatca 81
|||| ||||||||||||||||||||
Sbjct: 59 atttaattgagccgtgccaatatca 83
>54460_sbi-miR171i:pmrd
Length = 90
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 68 tgattgagccgtgccaatatc 88
>54455_sbi-miR171d:pmrd
Length = 154
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 115 tgattgagccgtgccaatatc 135
>51689_ptc-miR171f:pmrd
Length = 130
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 101 tgattgagccgtgccaatatc 121
>48905_osa-miR171n:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48904_osa-miR171m:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48899_osa-miR171e:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 89 tgattgagccgtgccaatatc 109
>48898_osa-miR171d:pmrd
Length = 135
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 105 tgattgagccgtgccaatatc 125
>48894_osa-miR170b:pmrd
Length = 107
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 87 tgattgagccgtgccaatatc 107
>48893_osa-miR170a:pmrd
Length = 99
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 79 tgattgagccgtgccaatatc 99
>48663_hvv-miR171:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>48662_hvv-miR170:pmrd
Length = 78
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 60 tgattgagccgtgccaatatc 80
|||||||||||||||||||||
Sbjct: 58 tgattgagccgtgccaatatc 78
>48567_gma-miR171a:pmrd
Length = 102
Score = 42.1 bits (21), Expect = 6e-05
Identities = 33/37 (89%)
Strand = Plus / Plus
Query: 45 ttgggtcctttaatttgattgagccgtgccaatatca 81
||||||||| | ||| ||||||||||||||||||||
Sbjct: 53 ttgggtcctgttttttcattgagccgtgccaatatca 89
>48406_bra-miR171d:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatca 91
>48405_bra-miR171c:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatca 85
>48404_bra-miR171b:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatca 92
>48365_bna-miR171c:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 65 gattgagccgtgccaatatca 85
>48364_bna-miR171b:pmrd
Length = 101
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 71 gattgagccgtgccaatatca 91
>48363_bna-miR171a:pmrd
Length = 104
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 72 gattgagccgtgccaatatca 92
>46978_ath-miR171b:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 61 gattgagccgtgccaatatca 81
|||||||||||||||||||||
Sbjct: 76 gattgagccgtgccaatatca 96
>46881_aqc-miR171f:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 6e-05
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 57 atttgattgagccgtgccaatatca 81
|||| ||||||||||||||||||||
Sbjct: 59 atttaattgagccgtgccaatatca 83
