miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AARH01002119.1/15983-15882 3694:Populus
trichocarpa
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 tctgctttgccaaaggagaattgccctg 90
|||| |||||||||||||||||||||||
Sbjct: 65 tctgttttgccaaaggagaattgccctg 92
>RF00445;mir-399;AM467681.2/18299-18208 29760:Vitis vinifera
Length = 92
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 63 tctgctttgccaaaggagaattgccctg 90
|||| |||||||||||||||||||||||
Sbjct: 55 tctgttttgccaaaggagaattgccctg 82
>RF00445;mir-399;ABIM01002717.1/30662-30788 3649:Carica papaya
(papaya)
Length = 127
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 68 tttgccaaaggagaattgccctg 90
|||||||||||||||||||||||
Sbjct: 95 tttgccaaaggagaattgccctg 117
>RF00445;mir-399;AM467681.2/12374-12276 29760:Vitis vinifera
Length = 99
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 ctgctttgccaaaggagaattgccctg 90
||||| |||||||||||||||||||||
Sbjct: 63 ctgctctgccaaaggagaattgccctg 89
>RF00445;mir-399;ABXC01002522.1/3232-3121 4558:Sorghum bicolor
(sorghum)
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 ttgccaaaggagaattgccctg 90
||||||||||||||||||||||
Sbjct: 81 ttgccaaaggagaattgccctg 102
