miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
(castor bean)
Length = 151
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 67 tctcctcggaccaggcttcattcc 90
||||||||||||||||||||||||
Sbjct: 121 tctcctcggaccaggcttcattcc 144
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ggggaatgttgtctggttcaagg 23
|||||||||||||||||||||||
Sbjct: 6 ggggaatgttgtctggttcaagg 28
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ggaatgttgtctggttcaaggtc 25
|||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggttcaaggtc 30
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ggaatgttgtctggttcaaggtc 25
|||||||||||||||||||||||
Sbjct: 6 ggaatgttgtctggttcaaggtc 28
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ggaatgttgtctggttcaaggtc 25
|||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggttcaaggtc 30
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 3 ggaatgttgtctggttcaaggtc 25
|||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggttcaaggtc 30
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctcggaccaggcttcattcctc 92
||||||||||||||||||||||
Sbjct: 87 ctcggaccaggcttcattcctc 108
>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus
trichocarpa
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tcctcggaccaggcttcattcc 90
||||||||||||||||||||||
Sbjct: 60 tcctcggaccaggcttcattcc 81
>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
Length = 94
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tcctcggaccaggcttcattcc 90
||||||||||||||||||||||
Sbjct: 66 tcctcggaccaggcttcattcc 87
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctcggaccaggcttcattcctc 92
||||||||||||||||||||||
Sbjct: 155 ctcggaccaggcttcattcctc 176
>RF00075;mir-166;CT009488.4/103389-103285 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctcggaccaggcttcattcctc 92
||||||||||||||||||||||
Sbjct: 79 ctcggaccaggcttcattcctc 100
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctcggaccaggcttcattcctc 92
||||||||||||||||||||||
Sbjct: 140 ctcggaccaggcttcattcctc 161
>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
Length = 105
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 tcctcggaccaggcttcattcc 90
||||||||||||||||||||||
Sbjct: 77 tcctcggaccaggcttcattcc 98
>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
Length = 98
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctcggaccaggcttcattcctc 92
||||||||||||||||||||||
Sbjct: 72 ctcggaccaggcttcattcctc 93
>RF00075;mir-166;AY664417.1/307265-307178 4577:Zea mays
Length = 88
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctcggaccaggcttcattcctc 92
||||||||||||||||||||||
Sbjct: 62 ctcggaccaggcttcattcctc 83
>RF00075;mir-166;ABXC01005455.1/25016-25131 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctcggaccaggcttcattcctc 92
||||||||||||||||||||||
Sbjct: 90 ctcggaccaggcttcattcctc 111
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 71 ctcggaccaggcttcattcctc 92
||||||||||||||||||||||
Sbjct: 109 ctcggaccaggcttcattcctc 130
