miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 161 bits (81), Expect = 2e-39
Identities = 84/85 (98%)
Strand = Plus / Plus
Query: 1 agacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctcta 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 17 agacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctcta 76
Query: 61 cccatgcactgcctcttccctggct 85
|||||||||||||||||||||||||
Sbjct: 77 cccatgcactgcctcttccctggct 101
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 95.6 bits (48), Expect = 9e-20
Identities = 79/87 (90%), Gaps = 3/87 (3%)
Strand = Plus / Plus
Query: 1 agacggggaacaggcagagcatggatggagctactaacagaagtaca--tgttttggctc 58
|||| |||||||||||| |||||||||| ||||||||||||| ||| |||||||||||
Sbjct: 17 agactgggaacaggcagtgcatggatggggctactaacagaa-aacatctgttttggctc 75
Query: 59 tacccatgcactgcctcttccctggct 85
||||| |||||||||||||||||||||
Sbjct: 76 tacccctgcactgcctcttccctggct 102
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 67.9 bits (34), Expect = 2e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 48 tgttttggctctacccatgcactgcctcttccctggct 85
|||||| |||||||||||||||||||||||||||||||
Sbjct: 71 tgtttttgctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 63.9 bits (32), Expect = 3e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 50 ttttggctctacccatgcactgcctcttccctggct 85
||||| ||||||||||||||||||||||||||||||
Sbjct: 73 ttttgtctctacccatgcactgcctcttccctggct 108
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 48 tgttttggctctacccatgcactgcctcttccctggc 84
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 6 gggaacaggcagagcatggatggagcta 33
||||| ||||||||||||||||||||||
Sbjct: 23 gggaagaggcagagcatggatggagcta 50
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 56.0 bits (28), Expect = 7e-08
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 50 ttttggctctacccatgcactgcctcttccctggct 85
|||||| ||||||| |||||||||||||||||||||
Sbjct: 71 ttttggttctacccctgcactgcctcttccctggct 106
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 48 tgttttggctctacccatgcactgcctcttccctggct 85
|||| |||||| || |||||||||||||||||||||||
Sbjct: 68 tgttgtggctccactcatgcactgcctcttccctggct 105
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 catgcactgcctcttccctggct 85
|||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggct 139
