miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 228 bits (115), Expect = 2e-59
Identities = 163/178 (91%), Gaps = 2/178 (1%)
Strand = Plus / Plus
Query: 5 gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 64
|||||||| ||||||||| ||||| ||| |||||||||||||||||||||||||||||
Sbjct: 15 gctccttaaagttcaaacatgagttgagcagggtaaagaaaagctgctaagctatggatc 74
Query: 65 ccataagccctaatccttgtattg--aaaaaggacttggtaatatggcttgcatatctca 122
||||||||||||||||||||| | |||||||| ||||| |||||| ||||||||||||
Sbjct: 75 ccataagccctaatccttgtaaagtaaaaaaggatttggttatatggattgcatatctca 134
Query: 123 ggagctttaacttaccctttaattgcttttactcttctttggattgaagggagctcta 180
||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 135 ggagctttaacttgccctttaatggcttttactcttctttggattgaagggagctcta 192
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 77.8 bits (39), Expect = 5e-14
Identities = 62/67 (92%), Gaps = 2/67 (2%)
Strand = Plus / Plus
Query: 114 catatctcaggagctttaacttaccc-tttaattgcttttactcttctttggattgaagg 172
||||||||||||||||| |||||||| |||||| |||| ||||||||||||||||||||
Sbjct: 130 catatctcaggagctttcacttacccctttaatggcttc-actcttctttggattgaagg 188
Query: 173 gagctct 179
|||||||
Sbjct: 189 gagctct 195
Score = 65.9 bits (33), Expect = 2e-10
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 5 gctccttatagttcaaacgagagtttagcggggtaaagaaaagctgctaagctatggata 64
||||||| ||||||| ||| ||||||| |||| ||| ||||||||||||||||||||
Sbjct: 15 gctccttgaagttcaatggagggtttagcagggtgaagtaaagctgctaagctatggatc 74
Query: 65 ccataagcc 73
|||||||||
Sbjct: 75 ccataagcc 83
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 ggcttgcatatctcaggagcttta 131
||||||||||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagcttta 124
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 108 ggcttgcatatctcaggagcttta 131
||||||||||||||||||||||||
Sbjct: 109 ggcttgcatatctcaggagcttta 132
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 107 tggcttgcatatctcaggagctt 129
|||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagctt 138
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 107 tggcttgcatatctcaggagct 128
||||||||||||||||||||||
Sbjct: 116 tggcttgcatatctcaggagct 137
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 199 tctttggattgaagggagctct 220
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 210 tctttggattgaagggagctct 231
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 153 tctttggattgaagggagctct 174
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 158 tctttggattgaagggagctct 179
||||||||||||||||||||||
Sbjct: 240 tctttggattgaagggagctct 261
