miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
          (papaya)
          Length = 194

 Score = 83.8 bits (42), Expect = 7e-16
 Identities = 60/66 (90%)
 Strand = Plus / Plus

                                                                      
Query: 3  gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 62
          |||||||||||||||||||||| ||| ||||  ||||||||||||||| |||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaggattttgcagggttgattgagctgccgagctatggat 72

                
Query: 63 tccaca 68
          ||||||
Sbjct: 73 tccaca 78



 Score = 54.0 bits (27), Expect = 6e-07
 Identities = 64/75 (85%), Gaps = 1/75 (1%)
 Strand = Plus / Plus

                                                                       
Query: 98  taggcttgtggcttgcatacctcaggagctgcatta-cctgagttgcatcatgttttgga 156
           |||||||| || ||||||| |||||||||||||||| ||| || |  ||| |  ||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagcttaatccttgtttgga 167

                          
Query: 157 ttgaagggagctcta 171
           |||||||||||||||
Sbjct: 168 ttgaagggagctcta 182




>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
          (castor bean)
          Length = 194

 Score = 79.8 bits (40), Expect = 1e-14
 Identities = 61/68 (89%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatga 60
          |||||||||||||||||||||||| ||| ||| | ||| |||||||||||||||||||| 
Sbjct: 11 tggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatgg 70

                  
Query: 61 attccaca 68
          || |||||
Sbjct: 71 atcccaca 78



 Score = 65.9 bits (33), Expect = 2e-10
 Identities = 39/41 (95%)
 Strand = Plus / Plus

                                                    
Query: 96  gataggcttgtggcttgcatacctcaggagctgcattacct 136
           ||||||||||||||||||||| |||||||||| ||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagcttcattacct 146




>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
          Length = 165

 Score = 75.8 bits (38), Expect = 2e-13
 Identities = 59/66 (89%)
 Strand = Plus / Plus

                                                                      
Query: 3  gagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatgaat 62
          |||||||||||||||||||||||| |  |||| ||| ||| |||||||||||||||||||
Sbjct: 1  gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60

                
Query: 63 tccaca 68
           |||||
Sbjct: 61 cccaca 66



 Score = 50.1 bits (25), Expect = 1e-05
 Identities = 56/65 (86%), Gaps = 1/65 (1%)
 Strand = Plus / Plus

                                                                       
Query: 107 ggcttgcatacctcaggagctgcattacctga-gttgcatcatgttttggattgaaggga 165
           |||||||||| ||||||||||  ||||||| | |||  ||| | ||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaaggga 160

                
Query: 166 gctct 170
           |||||
Sbjct: 161 gctct 165




>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
          Length = 194

 Score = 67.9 bits (34), Expect = 4e-11
 Identities = 37/38 (97%)
 Strand = Plus / Plus

                                                 
Query: 96  gataggcttgtggcttgcatacctcaggagctgcatta 133
           ||||||||||||||||||||| ||||||||||||||||
Sbjct: 106 gataggcttgtggcttgcatatctcaggagctgcatta 143



 Score = 58.0 bits (29), Expect = 4e-08
 Identities = 47/53 (88%)
 Strand = Plus / Plus

                                                               
Query: 1  tggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctga 53
          |||||||||||||||||||||||| | | || || ||| ||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctga 63




>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
          Length = 186

 Score = 61.9 bits (31), Expect = 3e-09
 Identities = 52/59 (88%)
 Strand = Plus / Plus

                                                                     
Query: 1  tggagctccttgaagtccaatagaagatgttgctaggttgattgagctgctgagctatg 59
          |||||||||||||||||||||||| | | ||||| ||| |||| ||||||| |||||||
Sbjct: 11 tggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatg 69



 Score = 44.1 bits (22), Expect = 6e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 150 ttttggattgaagggagctcta 171
           ||||||||||||||||||||||
Sbjct: 153 ttttggattgaagggagctcta 174




>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
          Length = 200

 Score = 52.0 bits (26), Expect = 3e-06
 Identities = 58/66 (87%), Gaps = 2/66 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  tggagctccttgaagtccaatagaagatgttgctaggtt-gattgagctgctgagctatg 59
          |||||||||||||||||||| ||||||| |  | ||||| |||||||||||||| |||||
Sbjct: 11 tggagctccttgaagtccaacagaagatctaac-aggttagattgagctgctgacctatg 69

                
Query: 60 aattcc 65
           |||||
Sbjct: 70 gattcc 75



 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 144 atcatgttttggattgaagggagctcta 171
           ||||| ||||||||||||||||||||||
Sbjct: 161 atcattttttggattgaagggagctcta 188




>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
           Japonica Group
          Length = 274

 Score = 48.1 bits (24), Expect = 4e-05
 Identities = 33/36 (91%)
 Strand = Plus / Plus

                                               
Query: 96  gataggcttgtggcttgcatacctcaggagctgcat 131
           ||||||||| |||||||||| || ||||||||||||
Sbjct: 187 gataggcttatggcttgcatgccccaggagctgcat 222