miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46285_miR396:micropc
          Length = 108

 Score =  214 bits (108), Expect = 1e-56
 Identities = 108/108 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccacatctttcttgaactgcatctggctttatcactccatgaatatgattcttgcgag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   ttccacatctttcttgaactgcatctggctttatcactccatgaatatgattcttgcgag 60

                                                           
Query: 61  acttcggaggaggtgacgcgatgatggcggttcaataaagctgtggga 108
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acttcggaggaggtgacgcgatgatggcggttcaataaagctgtggga 108




>46751_miR396:micropc
          Length = 108

 Score =  190 bits (96), Expect = 1e-49
 Identities = 105/108 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccacatctttcttgaactgcatctggctttatcactccatgaatatgattcttgcgag 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1   ttccacagctttcttgaactgcatctggctttatcactccatgaatatgattcttgcaag 60

                                                           
Query: 61  acttcggaggaggtgacgcgatgatggcggttcaataaagctgtggga 108
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acttcggtggaggtgacgcgatgatggcggttcaataaagctgtggga 108




>46345_miR396:micropc
          Length = 108

 Score =  190 bits (96), Expect = 1e-49
 Identities = 105/108 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccacatctttcttgaactgcatctggctttatcactccatgaatatgattcttgcgag 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1   ttccacagctttcttgaactgcatctggctttatcactccatgaatatgattcttgcaag 60

                                                           
Query: 61  acttcggaggaggtgacgcgatgatggcggttcaataaagctgtggga 108
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acttcggtggaggtgacgcgatgatggcggttcaataaagctgtggga 108




>45064_miR396:micropc
          Length = 108

 Score =  190 bits (96), Expect = 1e-49
 Identities = 105/108 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttccacatctttcttgaactgcatctggctttatcactccatgaatatgattcttgcgag 60
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 1   ttccacagctttcttgaactgcatctggctttatcactccatgaatatgattcttgcaag 60

                                                           
Query: 61  acttcggaggaggtgacgcgatgatggcggttcaataaagctgtggga 108
           ||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  acttcggtggaggtgacgcgatgatggcggttcaataaagctgtggga 108




>46804_miR396:micropc
          Length = 88

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 67  gcggttcaataaagctgtggga 88




>46787_miR396:micropc
          Length = 95

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacatctttcttgaactgcatct 26
          ||||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26




>46729_miR396:micropc
          Length = 114

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 93  gcggttcaataaagctgtggga 114




>46723_miR396:micropc
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 80  gcggttcaataaagctgtggga 101



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>46571_miR396:micropc
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 94  gcggttcaataaagctgtggga 115




>46469_miR396:micropc
          Length = 88

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 67  gcggttcaataaagctgtggga 88




>46290_miR396:micropc
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 66  gcggttcaataaagctgtggga 87




>46087_miR396:micropc
          Length = 88

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 67  gcggttcaataaagctgtggga 88




>46014_miR396:micropc
          Length = 114

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 93  gcggttcaataaagctgtggga 114




>45774_miR396:micropc
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 80  gcggttcaataaagctgtggga 101



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>45646_miR396:micropc
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 94  gcggttcaataaagctgtggga 115




>45626_miR396:micropc
          Length = 95

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacatctttcttgaactgcatct 26
          ||||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26




>45555_miR396:micropc
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 94  gcggttcaataaagctgtggga 115




>45530_miR396:micropc
          Length = 95

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacatctttcttgaactgcatct 26
          ||||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26




>45477_miR396:micropc
          Length = 101

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 80  gcggttcaataaagctgtggga 101



 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>45423_miR396:micropc
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 66  gcggttcaataaagctgtggga 87




>45408_miR396:micropc
          Length = 114

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 93  gcggttcaataaagctgtggga 114




>45341_miR396:micropc
          Length = 87

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 66  gcggttcaataaagctgtggga 87




>45339_miR396:micropc
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacatctttcttgaactgcatct 26
          ||||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 79  gcggttcaataaagctgtggga 100




>45336_miR396:micropc
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 94  gcggttcaataaagctgtggga 115




>45046_miR396:micropc
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 94  gcggttcaataaagctgtggga 115




>45040_miR396:micropc
          Length = 100

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacatctttcttgaactgcatct 26
          ||||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 79  gcggttcaataaagctgtggga 100




>44996_miR396:micropc
          Length = 115

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 94  gcggttcaataaagctgtggga 115




>44986_miR396:micropc
          Length = 182

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacatctttcttgaactgcatct 26
          ||||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 161 gcggttcaataaagctgtggga 182




>44921_miR396:micropc
          Length = 182

 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 25/26 (96%)
 Strand = Plus / Plus

                                    
Query: 1  ttccacatctttcttgaactgcatct 26
          ||||||| ||||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatct 26



 Score = 44.1 bits (22), Expect = 2e-05
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 87  gcggttcaataaagctgtggga 108
           ||||||||||||||||||||||
Sbjct: 161 gcggttcaataaagctgtggga 182




>46815_miR396:micropc
          Length = 110

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>46556_miR396:micropc
          Length = 113

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>46059_miR396:micropc
          Length = 113

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>45980_miR396:micropc
          Length = 113

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>45667_miR396:micropc
          Length = 110

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>45463_miR396:micropc
          Length = 113

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>45335_miR396:micropc
          Length = 113

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>44875_miR396:micropc
          Length = 113

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>44831_miR396:micropc
          Length = 110

 Score = 42.1 bits (21), Expect = 8e-05
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                   
Query: 1  ttccacatctttcttgaactgcatc 25
          ||||||| |||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcatc 25




>46137_miR396:micropc
          Length = 74

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacatctttcttgaactgcat 24
          ||||||| ||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>45938_miR396:micropc
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacatctttcttgaactgcat 24
          ||||||| ||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>45790_miR396:micropc
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacatctttcttgaactgcat 24
          ||||||| ||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>45426_miR396:micropc
          Length = 74

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacatctttcttgaactgcat 24
          ||||||| ||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>45136_miR396:micropc
          Length = 74

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacatctttcttgaactgcat 24
          ||||||| ||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24




>44995_miR396:micropc
          Length = 97

 Score = 40.1 bits (20), Expect = 3e-04
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                  
Query: 1  ttccacatctttcttgaactgcat 24
          ||||||| ||||||||||||||||
Sbjct: 1  ttccacagctttcttgaactgcat 24