miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 206 bits (104), Expect = 4e-53
Identities = 104/104 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggttcaaggtctcgcttgtgatttaaggatgatttgtgcatgcgtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggttcaaggtctcgcttgtgatttaaggatgatttgtgcatgcgtaat 67
Query: 61 ttttattccttgaatctatgagatctcggaccaggcttcattcc 104
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 ttttattccttgaatctatgagatctcggaccaggcttcattcc 111
>RF00075;mir-166;AC226041.1/11826-11708 4641:Musa acuminata
Length = 119
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 80 gagatctcggaccaggcttcattcc 104
|||||||||||||||||||||||||
Sbjct: 88 gagatctcggaccaggcttcattcc 112
>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
Length = 114
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 64 tattccttgaatctatgagatctcggaccaggcttcattcc 104
||||||||| |||| ||||||||||||||||||||||||
Sbjct: 67 tattccttggatctgcaagatctcggaccaggcttcattcc 107
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggttcaaggtct 24
||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggttcaaggtct 31
>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
Length = 122
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggttcaaggtctcgctt 29
|||||||||||||||||||||||| ||||
Sbjct: 6 ggaatgttgtctggttcaaggtcttgctt 34
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 agatctcggaccaggcttcattcc 104
||||||||||||||||||||||||
Sbjct: 94 agatctcggaccaggcttcattcc 117
>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
Indica Group
Length = 121
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ggaatgttgtctggttcaaggtctc 25
|||||||||||||||||||||||||
Sbjct: 8 ggaatgttgtctggttcaaggtctc 32
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 92 gatctcggaccaggcttcattcc 114
>RF00075;mir-166;AY501431.1/1-212 4577:Zea mays
Length = 212
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 agatctcggaccaggcttcattcc 104
||||||||||||||||||||||||
Sbjct: 184 agatctcggaccaggcttcattcc 207
>RF00075;mir-166;ABXC01006910.1/39676-39486 4558:Sorghum bicolor
(sorghum)
Length = 191
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 agatctcggaccaggcttcattcc 104
||||||||||||||||||||||||
Sbjct: 161 agatctcggaccaggcttcattcc 184
>RF00075;mir-166;AK251614.1/146-305 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 160
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 agatctcggaccaggcttcattcc 104
||||||||||||||||||||||||
Sbjct: 130 agatctcggaccaggcttcattcc 153
>RF00075;mir-166;AAAA02020902.1/104196-104017 39946:Oryza sativa
Indica Group
Length = 180
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 agatctcggaccaggcttcattcc 104
||||||||||||||||||||||||
Sbjct: 150 agatctcggaccaggcttcattcc 173
>RF00075;mir-166;AP003614.2/6887-6709 39947:Oryza sativa Japonica
Group
Length = 179
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 81 agatctcggaccaggcttcattcc 104
||||||||||||||||||||||||
Sbjct: 149 agatctcggaccaggcttcattcc 172
>RF00075;mir-166;DQ908436.1/479-591 3635:Gossypium hirsutum (upland
cotton)
Length = 113
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 84 gatctcggaccaggcttcattcc 106
>RF00075;mir-166;ABIM01012777.1/4514-4390 3649:Carica papaya
(papaya)
Length = 125
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 96 gatctcggaccaggcttcattcc 118
>RF00075;mir-166;ABIM01018276.1/2199-2062 3649:Carica papaya
(papaya)
Length = 138
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 109 gatctcggaccaggcttcattcc 131
>RF00075;mir-166;AARH01005662.1/95261-95577 3694:Populus trichocarpa
Length = 317
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 288 gatctcggaccaggcttcattcc 310
>RF00075;mir-166;AARH01007982.1/90633-90310 3694:Populus trichocarpa
Length = 324
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 295 gatctcggaccaggcttcattcc 317
>RF00075;mir-166;AARH01003608.1/24010-23917 3694:Populus trichocarpa
Length = 94
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 65 gatctcggaccaggcttcattcc 87
>RF00075;mir-166;AARH01004299.1/36070-36161 3694:Populus trichocarpa
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 63 gatctcggaccaggcttcattcc 85
>RF00075;mir-166;AASG02003618.1/9737-9830 3988:Ricinus communis
(castor bean)
Length = 94
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 65 gatctcggaccaggcttcattcc 87
>RF00075;mir-166;AC148487.14/34671-34762 3880:Medicago truncatula
(barrel medic)
Length = 92
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 63 gatctcggaccaggcttcattcc 85
>RF00075;mir-166;AC148816.3/87512-87332 3880:Medicago truncatula
(barrel medic)
Length = 181
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 152 gatctcggaccaggcttcattcc 174
>RF00075;mir-166;AC235255.1/12904-12739 3847:Glycine max (soybean)
Length = 166
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 137 gatctcggaccaggcttcattcc 159
>RF00075;mir-166;CAAP02007291.1/14711-14590 29760:Vitis vinifera
Length = 122
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 93 gatctcggaccaggcttcattcc 115
>RF00075;mir-166;AM448542.2/4591-4502 29760:Vitis vinifera
Length = 90
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 61 gatctcggaccaggcttcattcc 83
>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattcc 90
>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
(sorghum)
Length = 97
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 68 gatctcggaccaggcttcattcc 90
>RF00075;mir-166;AP008218.1/18370254-18370388 39947:Oryza sativa
Japonica Group
Length = 135
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 106 gatctcggaccaggcttcattcc 128
>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
Japonica Group
Length = 103
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 82 gatctcggaccaggcttcattcc 104
|||||||||||||||||||||||
Sbjct: 74 gatctcggaccaggcttcattcc 96
>RF00075;mir-166;AC155889.2/42101-41932 3880:Medicago truncatula
(barrel medic)
Length = 170
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 atctcggaccaggcttcattcc 104
||||||||||||||||||||||
Sbjct: 142 atctcggaccaggcttcattcc 163
>RF00075;mir-166;AC140029.19/70482-70585 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 83 atctcggaccaggcttcattcc 104
||||||||||||||||||||||
Sbjct: 76 atctcggaccaggcttcattcc 97
