miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 115 bits (58), Expect = 8e-26
Identities = 73/78 (93%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggatg 60
|||||||||||||||||||||||| ||||||||||||| ||||||||| || | ||||||
Sbjct: 5 gcctggctccctgtatgccatttggagagctcatcgaaacatcaatgatctctttggatg 64
Query: 61 gcgtatgaggagccaagc 78
||||||||||||||||||
Sbjct: 65 gcgtatgaggagccaagc 82
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 99.6 bits (50), Expect = 5e-21
Identities = 71/78 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggatg 60
||||||||||||||||||||| | | ||||||| ||| ||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatatatgaagctcattgaaaaatcaatgacctttgtggatg 64
Query: 61 gcgtatgaggagccaagc 78
||||||||||||||||||
Sbjct: 65 gcgtatgaggagccaagc 82
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/75 (88%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggatg 60
|||||||||||||||||||||||| ||||| || || |||| ||| |||| |||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaccggcacatcgatggccttcgtggatg 64
Query: 61 gcgtatgaggagcca 75
|||||||||||||||
Sbjct: 65 gcgtatgaggagcca 79
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 69.9 bits (35), Expect = 4e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggatg 60
|||||||||||||||||||||||| ||||| || || |||||| || ||| |||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaccg-agcatcgctggcctccgtggatg 63
Query: 61 gcgtatgaggagcca 75
|||||||||||||||
Sbjct: 64 gcgtatgaggagcca 78
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 69.9 bits (35), Expect = 4e-12
Identities = 66/75 (88%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggatg 60
||||||||||||||||||||| || |||| |||||| | ||| ||||||| |||||||
Sbjct: 5 gcctggctccctgtatgccatatgctgagcccatcga-gtatcgatgacctccgtggatg 63
Query: 61 gcgtatgaggagcca 75
|||||||||||||||
Sbjct: 64 gcgtatgaggagcca 78
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 69.9 bits (35), Expect = 4e-12
Identities = 65/75 (86%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagagctcatcgaagcatcaatgacctttgtggatg 60
|||||||||||||||||||||||| ||||| || || | | || ||| ||| |||||||
Sbjct: 5 gcctggctccctgtatgccatttgcagagcccaacggatcctcgatggcctccgtggatg 64
Query: 61 gcgtatgaggagcca 75
|||||||||||||||
Sbjct: 65 gcgtatgaggagcca 79
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagag 29
|||||||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgtagag 33
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgt 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgt 29
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagagctca 33
|||||||||||||||||||||||| | ||||||
Sbjct: 5 gcctggctccctgtatgccatttgcaaagctca 37
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 58 atggcgtatgaggagccaagc 78
|||||||||||||||||||||
Sbjct: 65 atggcgtatgaggagccaagc 85
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttg 24
||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttg 28
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgtagagctcatc 35
||||||||||||| |||||||||| | ||||||||
Sbjct: 5 gcctggctccctgcatgccatttgcatagctcatc 39
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccat 25
