miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AASG02010073.1/7999-8131 3988:Ricinus communis
          (castor bean)
          Length = 133

 Score = 69.9 bits (35), Expect = 6e-12
 Identities = 35/35 (100%)
 Strand = Plus / Plus

                                             
Query: 1  gggaatgttgtctggctcgaggactctcttttgat 35
          |||||||||||||||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgaggactctcttttgat 41



 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                      
Query: 74  agtgtcgtcggaccaggcttcattccc 100
           |||||||||||||||||||||||||||
Sbjct: 101 agtgtcgtcggaccaggcttcattccc 127




>RF00075;mir-166;ABIM01020443.1/6232-6097 3649:Carica papaya
           (papaya)
          Length = 136

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 73  tagtgtcgtcggaccaggcttcattccc 100
           ||||||||||||||||||||||||||||
Sbjct: 103 tagtgtcgtcggaccaggcttcattccc 130



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gggaatgttgtctggctcgaggac 24
          ||||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgaggac 30




>RF00075;mir-166;EU548853.1/145-266 3702:Arabidopsis thaliana (thale
           cress)
          Length = 122

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                       
Query: 73  tagtgtcgtcggaccaggcttcattccc 100
           ||||||||||||||||||||||||||||
Sbjct: 89  tagtgtcgtcggaccaggcttcattccc 116



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  gggaatgttgtctggctcgaggactct 27
          |||| ||||||||||||||||||||||
Sbjct: 7  gggactgttgtctggctcgaggactct 33




>RF00075;mir-166;AARH01001165.1/83261-83385 3694:Populus
          trichocarpa
          Length = 125

 Score = 54.0 bits (27), Expect = 3e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 1  gggaatgttgtctggctcgaggactct 27
          |||||||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgaggactct 33



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 77  gtcgtcggaccaggcttcattccc 100
           ||||||||||||||||||||||||
Sbjct: 96  gtcgtcggaccaggcttcattccc 119




>RF00075;mir-166;AM468140.2/16750-16595 29760:Vitis vinifera
          Length = 156

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  gtgtcgtcggaccaggcttcattccc 100
           ||||||||||||||||||||||||||
Sbjct: 125 gtgtcgtcggaccaggcttcattccc 150



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gggaatgttgtctggctcgaggac 24
          ||||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgaggac 30




>RF00075;mir-166;CAAP02000145.1/77043-77192 29760:Vitis vinifera
          Length = 150

 Score = 52.0 bits (26), Expect = 1e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 75  gtgtcgtcggaccaggcttcattccc 100
           ||||||||||||||||||||||||||
Sbjct: 119 gtgtcgtcggaccaggcttcattccc 144



 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gggaatgttgtctggctcgaggac 24
          ||||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgaggac 30




>RF00075;mir-166;AARH01006070.1/215270-215403 3694:Populus
          trichocarpa
          Length = 134

 Score = 50.1 bits (25), Expect = 5e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 1  gggaatgttgtctggctcgaggact 25
          |||||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgaggact 31




>RF00075;mir-166;AASG02002547.1/1046-1166 3988:Ricinus communis
           (castor bean)
          Length = 121

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 73  tagtgtcgtcggaccaggcttcattccc 100
           ||||| ||||||||||||||||||||||
Sbjct: 88  tagtgacgtcggaccaggcttcattccc 115



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gggaatgttgtctggctcgagg 22
          ||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgagg 28




>RF00075;mir-166;AC144592.26/52711-52605 3880:Medicago truncatula
          (barrel medic)
          Length = 107

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gggaatgttgtctggctcgaggac 24
          ||||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgaggac 30




>RF00075;mir-166;BABK01006649.1/1239-1127 34305:Lotus japonicus
          Length = 113

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                  
Query: 1  gggaatgttgtctggctcgaggac 24
          ||||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgaggac 30



 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                      
Query: 74  agtgtcgtcggaccaggcttcattccc 100
           ||||| |||||||||||||||||||||
Sbjct: 81  agtgttgtcggaccaggcttcattccc 107




>RF00075;mir-166;AP009261.1/72240-72093 4081:Solanum lycopersicum
          Length = 148

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 73  tagtgtcgtcggaccaggcttcattccc 100
           |||||| |||||||||||||||||||||
Sbjct: 115 tagtgttgtcggaccaggcttcattccc 142



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gggaatgttgtctggctcgagg 22
          ||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgagg 28




>RF00075;mir-166;AY599420.1/1-185 4096:Nicotiana sylvestris (wood
           tobacco)
          Length = 185

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 73  tagtgtcgtcggaccaggcttcattccc 100
           |||||| |||||||||||||||||||||
Sbjct: 154 tagtgttgtcggaccaggcttcattccc 181



 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gggaatgttgtctggctcgagg 22
          ||||||||||||||||||||||
Sbjct: 5  gggaatgttgtctggctcgagg 26




>RF00075;mir-166;EU548832.1/235-380 3702:Arabidopsis thaliana
          (thale cress)
          Length = 146

 Score = 46.1 bits (23), Expect = 8e-05
 Identities = 26/27 (96%)
 Strand = Plus / Plus

                                     
Query: 1  gggaatgttgtctggctcgaggactct 27
          |||| ||||||||||||||||||||||
Sbjct: 7  gggactgttgtctggctcgaggactct 33




>RF00075;mir-166;AC232546.1/61469-61348 51351:Brassica rapa subsp.
           pekinensis
          Length = 122

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  cgtcggaccaggcttcattccc 100
           ||||||||||||||||||||||
Sbjct: 95  cgtcggaccaggcttcattccc 116




>RF00075;mir-166;AB016871.1/77005-76861 3702:Arabidopsis thaliana
           (thale cress)
          Length = 145

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 79  cgtcggaccaggcttcattccc 100
           ||||||||||||||||||||||
Sbjct: 118 cgtcggaccaggcttcattccc 139




>RF00075;mir-166;AARH01000156.1/300448-300294 3694:Populus
          trichocarpa
          Length = 155

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gggaatgttgtctggctcgagg 22
          ||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgagg 28




>RF00075;mir-166;FJ010939.2/353-450 52838:Musa balbisiana
          Length = 98

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gggaatgttgtctggctcgagg 22
          ||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgagg 28




>RF00075;mir-166;EU956093.1/113-209 4577:Zea mays
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gggaatgttgtctggctcgagg 22
          ||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgagg 28




>RF00075;mir-166;ABXC01002952.1/108749-108653 4558:Sorghum bicolor
          (sorghum)
          Length = 97

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gggaatgttgtctggctcgagg 22
          ||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgagg 28




>RF00075;mir-166;AP008208.1/26148565-26148667 39947:Oryza sativa
          Japonica Group
          Length = 103

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 1  gggaatgttgtctggctcgagg 22
          ||||||||||||||||||||||
Sbjct: 7  gggaatgttgtctggctcgagg 28