miRNEST 2.0, an integrative microRNA resource :: BLAST
>51707_ptc-miR319a:pmrd
Length = 188
Score = 111 bits (56), Expect = 2e-25
Identities = 68/72 (94%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 107 cagtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggact 166
Query: 180 gaagggagctcc 191
||||||||||||
Sbjct: 167 gaagggagctcc 178
Score = 97.6 bits (49), Expect = 3e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcattca 72
Query: 61 tccaaatgctgag 73
||||||| |||||
Sbjct: 73 tccaaatactgag 85
>48572_gma-miR319a:pmrd
Length = 207
Score = 105 bits (53), Expect = 1e-23
Identities = 62/65 (95%)
Strand = Plus / Plus
Query: 127 tgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactgaaggga 186
||||||||||||||||||||||| ||| |||||||| |||||||||||||||||||||||
Sbjct: 123 tgagtgaatgatgcgggagacaaattgaatcttaagtttcctgtacttggactgaaggga 182
Query: 187 gctcc 191
|||||
Sbjct: 183 gctcc 187
Score = 97.6 bits (49), Expect = 3e-21
Identities = 67/73 (91%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| |||||||| ||||| ||||||||||||| ||||||||||||
Sbjct: 23 gagctttcttcagtccactcatgggtgacagtaagattcaattagctgccgactcattca 82
Query: 61 tccaaatgctgag 73
|||||||| ||||
Sbjct: 83 tccaaatgttgag 95
>54844_vvi-miR319c:pmrd
Length = 182
Score = 103 bits (52), Expect = 5e-23
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 98 cagtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggact 157
Query: 180 gaagggagctcc 191
||||||||||||
Sbjct: 158 gaagggagctcc 169
Score = 101 bits (51), Expect = 2e-22
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||||||
Sbjct: 13 gagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactcattca 72
Query: 61 tccaaat 67
|||||||
Sbjct: 73 tccaaat 79
>48573_gma-miR319b:pmrd
Length = 208
Score = 99.6 bits (50), Expect = 7e-22
Identities = 68/74 (91%)
Strand = Plus / Plus
Query: 118 ctcagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttgga 177
||||| || ||||||||||||||||||||||| ||| ||||||| ||||||||||||||
Sbjct: 115 ctcagcaaatgagtgaatgatgcgggagacaaattgattcttaagtttcctgtacttgga 174
Query: 178 ctgaagggagctcc 191
||||||||||||||
Sbjct: 175 ctgaagggagctcc 188
Score = 75.8 bits (38), Expect = 1e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggatt-caattagcttccgactcattc 59
||||||||||||||||| ||||||| || || |||| ||||||||| |||||||||||
Sbjct: 23 gagctttcttcagtccacttatgggtgacaataagatttcaattagctgccgactcattc 82
Query: 60 atccaaatgctgag 73
||||||||||||||
Sbjct: 83 atccaaatgctgag 96
>46884_aqc-miR319:pmrd
Length = 177
Score = 75.8 bits (38), Expect = 1e-14
Identities = 62/70 (88%)
Strand = Plus / Plus
Query: 122 gtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactga 181
|||| ||| |||||||| ||||||| | |||||||||| ||||| ||||||||||||||
Sbjct: 104 gtaaatgaatgaatgatccgggagattaattggatcttatgcttcttgtacttggactga 163
Query: 182 agggagctcc 191
||||||||||
Sbjct: 164 agggagctcc 173
Score = 48.1 bits (24), Expect = 2e-06
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 1 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 60
||||| ||||||||||| ||| ||| | ||| ||||||||| ||| ||||||||||||
Sbjct: 4 gagctctcttcagtccactcataggtagtagtcagattcaatttgctgccgactcattca 63
Query: 61 tcca 64
||||
Sbjct: 64 tcca 67
>54391_rin-miR159:pmrd
Length = 192
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 35 gattcaattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>47656_ath-miRf10556-akr:pmrd
Length = 203
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 35 gattcaattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||||||
Sbjct: 151 gattcaattagcttccgactcattcatccaaat 119
>46992_ath-miR319a:pmrd
Length = 176
Score = 65.9 bits (33), Expect = 1e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 35 gattcaattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||||||
Sbjct: 40 gattcaattagcttccgactcattcatccaaat 72
>51708_ptc-miR319b:pmrd
Length = 185
Score = 63.9 bits (32), Expect = 4e-11
Identities = 62/72 (86%)
Strand = Plus / Plus
Query: 120 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 179
|||||| ||| ||| ||||||||||||||| || ||||||| |||||| | |||||||
Sbjct: 104 cagtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggact 163
Query: 180 gaagggagctcc 191
||||||||||||
Sbjct: 164 gaagggagctcc 175
Score = 46.1 bits (23), Expect = 1e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 35 gattcaattagcttccgactcattcatccaaatgctgag 73
|||| |||||| | ||||||||||||||||||| |||||
Sbjct: 47 gatttaattagttaccgactcattcatccaaatactgag 85
>54754_tar-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>54670_svi-miR159:pmrd
Length = 191
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48694_mma-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48479_fal-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48478_ech-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48429_crb-miR159:pmrd
Length = 194
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48422_cor-miR159:pmrd
Length = 193
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48421_cmi-miR159:pmrd
Length = 193
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>48415_bvl-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>46860_ape-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>46856_ahi-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>46855_aha-miR159:pmrd
Length = 192
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>46846_acb-miR159:pmrd
Length = 191
Score = 58.0 bits (29), Expect = 3e-09
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
|||||||||||||||||||||||||||||
Sbjct: 50 caattagcttccgactcattcatccaaat 78
>48476_dso-miR159:pmrd
Length = 192
Score = 52.0 bits (26), Expect = 2e-07
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatcca 64
||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatcca 76
>48788_nof-miR159:pmrd
Length = 192
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 caattagcttccgactcattcatccaaat 67
||||||||||||||||||||||| |||||
Sbjct: 51 caattagcttccgactcattcatacaaat 79
>54846_vvi-miR319f:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctcc 191
|||| ||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctcc 180
>51713_ptc-miR319g:pmrd
Length = 204
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctcc 191
|||| ||||||||||||||||||||
Sbjct: 170 ctgtgcttggactgaagggagctcc 194
>51712_ptc-miR319f:pmrd
Length = 202
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctcc 191
|||| ||||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctcc 192
>51710_ptc-miR319d:pmrd
Length = 193
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctcc 191
|||| ||||||||||||||||||||
Sbjct: 159 ctgtgcttggactgaagggagctcc 183
>51709_ptc-miR319c:pmrd
Length = 196
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctcc 191
|||| ||||||||||||||||||||
Sbjct: 162 ctgtgcttggactgaagggagctcc 186
>51351_ppl-miR319:pmrd
Length = 204
Score = 42.1 bits (21), Expect = 2e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctcc 191
|||| ||||||||||||||||||||
Sbjct: 168 ctgtgcttggactgaagggagctcc 192
Score = 40.1 bits (20), Expect = 6e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 34 ggattcaattagcttccgactcattcat 61
||||| |||||||| |||||||||||||
Sbjct: 48 ggattgaattagctgccgactcattcat 75
>54843_vvi-miR319b:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>54686_tae-miR319a:pmrd
Length = 196
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 176 cttggactgaagggagctcc 195
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>54380_pvu-miR319c:pmrd
Length = 734
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 409 cttggactgaagggagctcc 428
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ctgtacttggactgaagggagctc 190
|||| |||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctc 170
>51390_ppt-miR319e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>51385_ppt-miR319b:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
>48687_ltu-miR319:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>46993_ath-miR319b:pmrd
Length = 172
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 172 cttggactgaagggagctcc 191
||||||||||||||||||||
Sbjct: 151 cttggactgaagggagctcc 170
