miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AC216447.1/33512-33607 3694:Populus trichocarpa
Length = 96
Score = 115 bits (58), Expect = 9e-26
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 1 ggaatgctggctggctcgaagcttaagcaaagagtatcctaacatgaaacaactgttaag 60
|||||| |||||||||||||||||||||||||||| | || || |||||||||||||||
Sbjct: 8 ggaatgttggctggctcgaagcttaagcaaagagttttctctcaagaaacaactgttaag 67
Query: 61 gcttcggaccaggcttcattcc 82
||||||||||||||||||||||
Sbjct: 68 gcttcggaccaggcttcattcc 89
>RF00075;mir-166;AC140029.19/70272-70377 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 taaggcttcggaccaggcttcattcc 82
||||||||||||||||||||||||||
Sbjct: 74 taaggcttcggaccaggcttcattcc 99
>RF00075;mir-166;BABK01014008.1/1570-1448 34305:Lotus japonicus
Length = 123
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 57 taaggcttcggaccaggcttcattcc 82
||||||||||||||||||||||||||
Sbjct: 91 taaggcttcggaccaggcttcattcc 116
>RF00075;mir-166;ABIM01027778.1/12902-13001 3649:Carica papaya
(papaya)
Length = 100
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 58 aaggcttcggaccaggcttcattcc 82
|||||||||||||||||||||||||
Sbjct: 69 aaggcttcggaccaggcttcattcc 93
>RF00075;mir-166;ABXC01000087.1/360026-360107 4558:Sorghum bicolor
(sorghum)
Length = 82
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ggcttcggaccaggcttcattcc 82
|||||||||||||||||||||||
Sbjct: 53 ggcttcggaccaggcttcattcc 75
>RF00075;mir-166;AC096855.5/123486-123562 39947:Oryza sativa
Japonica Group
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 60 ggcttcggaccaggcttcattcc 82
|||||||||||||||||||||||
Sbjct: 48 ggcttcggaccaggcttcattcc 70
>RF00075;mir-166;ABEU01002839.1/114707-114612
145481:Physcomitrella patens subsp. patens
Length = 96
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 ttaaggcttcggaccaggcttcattcc 82
|||| ||||||||||||||||||||||
Sbjct: 63 ttaaagcttcggaccaggcttcattcc 89
>RF00075;mir-166;ABEU01001509.1/36829-36913 145481:Physcomitrella
patens subsp. patens
Length = 85
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 56 ttaaggcttcggaccaggcttcattcc 82
|||| ||||||||||||||||||||||
Sbjct: 52 ttaaagcttcggaccaggcttcattcc 78
>RF00075;mir-166;CAAP02001545.1/66166-66077 29760:Vitis vinifera
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcc 82
||||||||||||||||||||||
Sbjct: 62 gcttcggaccaggcttcattcc 83
>RF00075;mir-166;ABEU01002487.1/1609-1703 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcc 82
||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattcc 88
>RF00075;mir-166;ABEU01002053.1/8010-8104 145481:Physcomitrella
patens subsp. patens
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcc 82
||||||||||||||||||||||
Sbjct: 67 gcttcggaccaggcttcattcc 88
>RF00075;mir-166;ABEU01001509.1/36651-36730 145481:Physcomitrella
patens subsp. patens
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcc 82
||||||||||||||||||||||
Sbjct: 52 gcttcggaccaggcttcattcc 73
>RF00075;mir-166;ABEU01008046.1/36531-36607 145481:Physcomitrella
patens subsp. patens
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 61 gcttcggaccaggcttcattcc 82
||||||||||||||||||||||
Sbjct: 49 gcttcggaccaggcttcattcc 70
