miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51603_ptc-miR159b:pmrd
Length = 187
Score = 291 bits (147), Expect = 8e-80
Identities = 161/168 (95%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 70
Query: 61 atcccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcagga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71 atcccacagccctatcaccatcagtcattttgatgggcctgcggcttgcatatctcagga 130
Query: 121 gctttattacctaatgttagatcnnnnnnnggattgaagggagctcta 168
||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 131 gctttattacctaatgttagatctttttttggattgaagggagctcta 178
>54777_vvi-miR159c:pmrd
Length = 190
Score = 87.7 bits (44), Expect = 2e-18
Identities = 68/76 (89%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 60
|||||||||||||||||||||||| | || | |||||||||| |||||||||| ||||
Sbjct: 9 tggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatgg 68
Query: 61 atcccacagccctatc 76
||||||||||||||||
Sbjct: 69 atcccacagccctatc 84
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 87.7 bits (44), Expect = 2e-18
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 100 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 159
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 101 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 160
Query: 160 ggagctcta 168
|||||||||
Sbjct: 161 ggagctcta 169
>51604_ptc-miR159c:pmrd
Length = 183
Score = 87.7 bits (44), Expect = 2e-18
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 100 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 159
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
Query: 160 ggagctcta 168
|||||||||
Sbjct: 166 ggagctcta 174
>51602_ptc-miR159a:pmrd
Length = 183
Score = 87.7 bits (44), Expect = 2e-18
Identities = 61/69 (88%)
Strand = Plus / Plus
Query: 100 tgcggcttgcatatctcaggagctttattacctaatgttagatcnnnnnnnggattgaag 159
||||||||||||||||||||||||||||| |||||||||||||| |||||||||
Sbjct: 106 tgcggcttgcatatctcaggagctttattgcctaatgttagatccctttttggattgaag 165
Query: 160 ggagctcta 168
|||||||||
Sbjct: 166 ggagctcta 174
>54378_pvu-miR159:pmrd
Length = 174
Score = 65.9 bits (33), Expect = 9e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 60
||||||||||||||||||||| || | || | |||||| ||| |||||||| |||||||
Sbjct: 2 tggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatgg 61
Query: 61 atcccacag 69
|||||||||
Sbjct: 62 atcccacag 70
>54377_pvu-miR159:pmrd
Length = 174
Score = 65.9 bits (33), Expect = 9e-12
Identities = 60/69 (86%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 60
||||||||||||||||||||| || | || | |||||| ||| |||||||| |||||||
Sbjct: 2 tggagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatgg 61
Query: 61 atcccacag 69
|||||||||
Sbjct: 62 atcccacag 70
>48539_gma-miR159a:pmrd
Length = 214
Score = 58.0 bits (29), Expect = 2e-09
Identities = 59/69 (85%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatga 60
||||||||||||||||||||| || | || | |||||| || |||||||| |||||||
Sbjct: 21 tggagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatgg 80
Query: 61 atcccacag 69
|||||||||
Sbjct: 81 atcccacag 89
>46931_ath-miR159a:pmrd
Length = 184
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 106 ttgcatatctcaggagcttta 126
|||||||||||||||||||||
Sbjct: 114 ttgcatatctcaggagcttta 134
>54540_sly-miR159:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tggagctccttgaagtccaa 20
||||||||||||||||||||
Sbjct: 1 tggagctccttgaagtccaa 20
>48395_bra-miR159a:pmrd
Length = 185
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 103 ggcttgcatatctcaggagcttta 126
||||| ||||||||||||||||||
Sbjct: 111 ggcttacatatctcaggagcttta 134
>48339_bna-miR159:pmrd
Length = 183
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 103 ggcttgcatatctcaggagcttta 126
||||| ||||||||||||||||||
Sbjct: 109 ggcttacatatctcaggagcttta 132
