miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 121 bits (61), Expect = 4e-27
Identities = 70/73 (95%)
Strand = Plus / Plus
Query: 122 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 181
|||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||
Sbjct: 139 cagtaaatgagtgaatgatgcgggagacaaattgaatcttaagcttcctgtacttggact 198
Query: 182 gaagggagctccc 194
|||||||||||||
Sbjct: 199 gaagggagctccc 211
Score = 101 bits (51), Expect = 4e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 1 gagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcatt 60
||||||||||||||||||| |||||||||| |||||||| |||||||| ||||||||||
Sbjct: 11 gagagctttcttcagtccactcatgggtggcggtaggatttaattagctgccgactcatt 70
Query: 61 catccaaatgctgag 75
||||||||| |||||
Sbjct: 71 catccaaatactgag 85
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 113 bits (57), Expect = 9e-25
Identities = 69/73 (94%)
Strand = Plus / Plus
Query: 122 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 181
|||||| ||||||||||||||||||||||| ||| ||| |||||||||||||||||||||
Sbjct: 106 cagtaaatgagtgaatgatgcgggagacaaattgaatcctaagcttcctgtacttggact 165
Query: 182 gaagggagctccc 194
|||||||||||||
Sbjct: 166 gaagggagctccc 178
Score = 101 bits (51), Expect = 4e-21
Identities = 69/75 (92%)
Strand = Plus / Plus
Query: 1 gagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcatt 60
||||||||||||||||||| ||||||||| ||||||||| |||||||| ||||||||||
Sbjct: 10 gagagctttcttcagtccactcatgggtggtagtaggatttaattagctgccgactcatt 69
Query: 61 catccaaatgctgag 75
||||||||| |||||
Sbjct: 70 catccaaatactgag 84
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 107 bits (54), Expect = 6e-23
Identities = 69/74 (93%)
Strand = Plus / Plus
Query: 121 tcagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggac 180
||||||| ||||||||||||||||||||||| ||| |||||||||||||||| ||||||
Sbjct: 93 tcagtaaatgagtgaatgatgcgggagacaaattgtatcttaagcttcctgttattggac 152
Query: 181 tgaagggagctccc 194
||||||||||||||
Sbjct: 153 tgaagggagctccc 166
Score = 83.8 bits (42), Expect = 8e-16
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 gagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcatt 60
||||||||||||||||||| ||||||||| || || |||||||||| ||||||||||
Sbjct: 11 gagagctttcttcagtccattcatgggtggttataagaatcaattagctgccgactcatt 70
Query: 61 catccaaatgctga 74
||||||||||||||
Sbjct: 71 catccaaatgctga 84
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 105 bits (53), Expect = 2e-22
Identities = 68/73 (93%)
Strand = Plus / Plus
Query: 122 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 181
|||||| ||| ||||||||||||||||||| |||||||||||||| ||||| ||||||||
Sbjct: 99 cagtaaatgattgaatgatgcgggagacaaattggatcttaagctccctgtgcttggact 158
Query: 182 gaagggagctccc 194
|||||||||||||
Sbjct: 159 gaagggagctccc 171
Score = 91.7 bits (46), Expect = 3e-18
Identities = 65/70 (92%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 1 gagagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgact-cat 59
||||||||||||||||||| ||||||||||||||||||| |||||||| |||||| |||
Sbjct: 11 gagagctttcttcagtccactcatgggtggcagtaggattgaattagctgccgactccat 70
Query: 60 tcatccaaat 69
||||||||||
Sbjct: 71 tcatccaaat 80
>RF00638;MIR159;CR962124.2/16450-16257 3880:Medicago truncatula
(barrel medic)
Length = 194
Score = 99.6 bits (50), Expect = 1e-20
Identities = 62/66 (93%)
Strand = Plus / Plus
Query: 129 tgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggactgaaggga 188
||||||||||||||||||||||| ||| |||||||| ||||| |||||||||||||||||
Sbjct: 117 tgagtgaatgatgcgggagacaaattgaatcttaagtttcctatacttggactgaaggga 176
Query: 189 gctccc 194
||||||
Sbjct: 177 gctccc 182
Score = 63.9 bits (32), Expect = 8e-10
Identities = 66/76 (86%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 1 gagagctttcttcagtccaaacatgggtggcagtaggatt-caattagcttccgactcat 59
|||||||||||| |||||| |||||||| || || |||| ||||||||| | |||||||
Sbjct: 11 gagagctttctttagtccactcatgggtgacaataagatttcaattagctgctgactcat 70
Query: 60 tcatccaaatgctgag 75
||||||||||| ||||
Sbjct: 71 tcatccaaatgttgag 86
>RF00638;MIR159;EF091572.1/4-172 4081:Solanum lycopersicum
Length = 169
Score = 93.7 bits (47), Expect = 9e-19
Identities = 69/75 (92%), Gaps = 1/75 (1%)
Strand = Plus / Plus
Query: 120 ctcagtaactgagtgaatgatgcgggag-acaagttggatcttaagcttcctgtacttgg 178
||||| |||||||||||||| ||||||| |||||||| |||| ||||||||||||||||
Sbjct: 95 ctcagcaactgagtgaatgaagcgggagtacaagttgagtcttgagcttcctgtacttgg 154
Query: 179 actgaagggagctcc 193
|||||||||||||||
Sbjct: 155 actgaagggagctcc 169
Score = 58.0 bits (29), Expect = 5e-08
Identities = 62/73 (84%)
Strand = Plus / Plus
Query: 3 gagctttcttcagtccaaacatgggtggcagtaggattcaattagcttccgactcattca 62
|||||||||| |||||| ||||||| | |||| ||||||| ||| ||||||||||||
Sbjct: 1 gagctttctttagtccacacatggggaacgatagggttcaatttgctgccgactcattca 60
Query: 63 tccaaatgctgag 75
|||||||| ||||
Sbjct: 61 tccaaatgttgag 73
>RF00638;MIR159;AY922331.1/1646-1837 3702:Arabidopsis thaliana
(thale cress)
Length = 192
Score = 65.9 bits (33), Expect = 2e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 37 gattcaattagcttccgactcattcatccaaat 69
|||||||||||||||||||||||||||||||||
Sbjct: 47 gattcaattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AARH01001833.1/17947-18134 3694:Populus trichocarpa
Length = 188
Score = 65.9 bits (33), Expect = 2e-10
Identities = 63/73 (86%)
Strand = Plus / Plus
Query: 122 cagtaactgagtgaatgatgcgggagacaagttggatcttaagcttcctgtacttggact 181
|||||| ||| ||| ||||||||||||||| || ||||||| |||||| | |||||||
Sbjct: 104 cagtaaatgaatgagtgatgcgggagacaaattaaatcttaaacttcctatcattggact 163
Query: 182 gaagggagctccc 194
|||||||||||||
Sbjct: 164 gaagggagctccc 176
Score = 46.1 bits (23), Expect = 2e-04
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 37 gattcaattagcttccgactcattcatccaaatgctgag 75
|||| |||||| | ||||||||||||||||||| |||||
Sbjct: 47 gatttaattagttaccgactcattcatccaaatactgag 85
>RF00638;MIR159;AY775965.1/635-826 13288:Thlaspi arvense
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 caattagcttccgactcattcatccaaat 69
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775959.1/657-850 81985:Capsella rubella
Length = 194
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 caattagcttccgactcattcatccaaat 69
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775963.1/615-806 50459:Barbarea vulgaris (winter
cress)
Length = 192
Score = 58.0 bits (29), Expect = 5e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 41 caattagcttccgactcattcatccaaat 69
|||||||||||||||||||||||||||||
Sbjct: 51 caattagcttccgactcattcatccaaat 79
>RF00638;MIR159;AY775975.1/842-1033 3713:Brassica oleracea var.
acephala (kale)
Length = 192
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 41 caattagcttccgactcattcatccaaatgctgag 75
|||||||||||||| |||||||||||||| |||||
Sbjct: 51 caattagcttccgaatcattcatccaaatactgag 85
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 169 ctgtacttggactgaagggagctccc 194
|||| |||||||||||||||||||||
Sbjct: 161 ctgtgcttggactgaagggagctccc 186
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 169 ctgtacttggactgaagggagctccc 194
|||| |||||||||||||||||||||
Sbjct: 147 ctgtgcttggactgaagggagctccc 172
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 169 ctgtacttggactgaagggagctccc 194
|||| |||||||||||||||||||||
Sbjct: 163 ctgtgcttggactgaagggagctccc 188
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 7e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 169 ctgtacttggactgaagggagctccc 194
|||| |||||||||||||||||||||
Sbjct: 156 ctgtgcttggactgaagggagctccc 181
