miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>53179_ptc-miRf11357-akr:pmrd
Length = 141
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagatcactaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagatcactaca 75
Query: 61 tgtacagctcc 71
|||||||||||
Sbjct: 74 tgtacagctcc 64
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 98 gcgccatggaagctcaagaaagctgtggga 127
||||||||||||||||||||||||||||||
Sbjct: 37 gcgccatggaagctcaagaaagctgtggga 8
>52080_ptc-miRf10258-akr:pmrd
Length = 141
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagatcactaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 ttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagatcactaca 75
Query: 61 tgtacagctcc 71
|||||||||||
Sbjct: 74 tgtacagctcc 64
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 98 gcgccatggaagctcaagaaagctgtggga 127
||||||||||||||||||||||||||||||
Sbjct: 37 gcgccatggaagctcaagaaagctgtggga 8
>51738_ptc-miR396e:pmrd
Length = 145
Score = 141 bits (71), Expect = 1e-34
Identities = 71/71 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagatcactaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttctttgccttgcttaatctgtgtatatatagatcactaca 70
Query: 61 tgtacagctcc 71
|||||||||||
Sbjct: 71 tgtacagctcc 81
Score = 60.0 bits (30), Expect = 4e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 98 gcgccatggaagctcaagaaagctgtggga 127
||||||||||||||||||||||||||||||
Sbjct: 108 gcgccatggaagctcaagaaagctgtggga 137
>52893_ptc-miRf11071-akr:pmrd
Length = 148
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaacttctttgccttgcttaa 36
|||||||||||||||||||||| ||||| |||||||
Sbjct: 142 ttccacagctttcttgaacttccttgccatgcttaa 107
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 101 ccatggaagctcaagaaagctgtggga 127
|||||||||||||||||||| ||||||
Sbjct: 33 ccatggaagctcaagaaagccgtggga 7
>51737_ptc-miR396d:pmrd
Length = 154
Score = 56.0 bits (28), Expect = 7e-09
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctttgccttgcttaa 36
|||||||||||||||||||||| ||||| |||||||
Sbjct: 11 ttccacagctttcttgaacttccttgccatgcttaa 46
Score = 46.1 bits (23), Expect = 6e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 101 ccatggaagctcaagaaagctgtggga 127
|||||||||||||||||||| ||||||
Sbjct: 120 ccatggaagctcaagaaagccgtggga 146
>48748_mtr-miR396a:pmrd
Length = 93
Score = 50.1 bits (25), Expect = 4e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttcttt 25
|||||||||||||||||||||||||
Sbjct: 6 ttccacagctttcttgaacttcttt 30
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gaagctcaagaaagctgtggga 127
||||||||||||||||||||||
Sbjct: 67 gaagctcaagaaagctgtggga 88
>55078_zma-miR396g:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctt 24
||||||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaacttctt 26
>55077_zma-miR396f:pmrd
Length = 166
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctt 24
||||||||||||||||||||||||
Sbjct: 3 ttccacagctttcttgaacttctt 26
>54869_vvi-miR396b:pmrd
Length = 108
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctt 24
||||||||||||||||||||||||
Sbjct: 14 ttccacagctttcttgaacttctt 37
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 3 ccacagctttcttgaacttc 22
||||||||||||||||||||
Sbjct: 95 ccacagctttcttgaacttc 76
>48580_gma-miR396c:pmrd
Length = 117
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctt 24
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaacttctt 44
>48579_gma-miR396b:pmrd
Length = 126
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctt 24
||||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaacttctt 44
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gaagctcaagaaagctgtggga 127
||||||||||||||||||||||
Sbjct: 86 gaagctcaagaaagctgtggga 107
>47009_ath-miR396b:pmrd
Length = 135
Score = 48.1 bits (24), Expect = 2e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 104 tggaagctcaagaaagctgtggga 127
||||||||||||||||||||||||
Sbjct: 102 tggaagctcaagaaagctgtggga 125
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaactt 31
>54487_sbi-miR396c:pmrd
Length = 162
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttct 23
|||||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaacttct 43
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 3 ccacagctttcttgaacttctttg 26
||||||||||||||| ||||||||
Sbjct: 141 ccacagctttcttgaccttctttg 118
>48947_osa-miR396c:pmrd
Length = 141
Score = 46.1 bits (23), Expect = 6e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttct 23
|||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttct 33
>54868_vvi-miR396a:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 106 gaagctcaagaaagctgtggga 127
||||||||||||||||||||||
Sbjct: 84 gaagctcaagaaagctgtggga 105
Score = 42.1 bits (21), Expect = 1e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttcttt 25
|||||||||||||||||||| ||||
Sbjct: 14 ttccacagctttcttgaactacttt 38
>52304_ptc-miRf10482-akr:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 93 ttccacagctttcttgaacttc 72
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttctt 24
|||||| |||||||||||||||||
Sbjct: 10 ttccacggctttcttgaacttctt 33
>51736_ptc-miR396c:pmrd
Length = 102
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaacttc 22
||||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaacttc 32
Score = 40.1 bits (20), Expect = 4e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaacttctt 24
|||||| |||||||||||||||||
Sbjct: 94 ttccacggctttcttgaacttctt 71
>51564_pta-miR396:pmrd
Length = 119
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 17 ttccacagctttcttgaactt 37
>48374_bna-miR396a:pmrd
Length = 117
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>46888_aqc-miR396b:pmrd
Length = 89
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaactt 21
|||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaactt 21
>55083_zma-miR396l:pmrd
Length = 97
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55082_zma-miR396k:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55081_zma-miR396j:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55080_zma-miR396i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>55079_zma-miR396h:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55074_zma-miR396c:pmrd
Length = 104
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 4 ttccacagctttcttgaact 23
>55073_zma-miR396b:pmrd
Length = 136
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>55072_zma-miR396a:pmrd
Length = 137
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54871_vvi-miR396d:pmrd
Length = 120
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54870_vvi-miR396c:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>54645_sof-miR396:pmrd
Length = 134
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54584_smo-miR396:pmrd
Length = 168
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 3 ccacagctttcttgaacttc 22
||||||||||||||||||||
Sbjct: 153 ccacagctttcttgaacttc 134
>54486_sbi-miR396b:pmrd
Length = 128
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>54485_sbi-miR396a:pmrd
Length = 125
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>52079_ptc-miRf10257-akr:pmrd
Length = 130
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 9 ttccacagctttcttgaact 28
>51735_ptc-miR396b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>51734_ptc-miR396a:pmrd
Length = 123
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48946_osa-miR396b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48945_osa-miR396a:pmrd
Length = 154
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>48680_lja-miR396:pmrd
Length = 108
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 16 ttccacagctttcttgaact 35
>48578_gma-miR396a:pmrd
Length = 140
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 21 ttccacagctttcttgaact 40
>48508_ghr-miR396c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48507_ghr-miR396b:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
>48485_gcl-miR396a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 101 ttccacagctttcttgaact 82
>48110_ath-miRf11010-akr:pmrd
Length = 165
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 18 ttccacagctttcttgaact 37
>47008_ath-miR396a:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 11 ttccacagctttcttgaact 30
>46887_aqc-miR396a:pmrd
Length = 122
Score = 40.1 bits (20), Expect = 4e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 ttccacagctttcttgaact 20
||||||||||||||||||||
Sbjct: 1 ttccacagctttcttgaact 20
