miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>51347_ppe-miR408:pmrd
Length = 105
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 gacagggaacaggtagagcatggatggagttcccaacagaaaaatagagctgttgtggct 68
Query: 61 ctactcatgcactgcctcttccctggc 87
|||||||||||||||||||||||||||
Sbjct: 69 ctactcatgcactgcctcttccctggc 95
>51762_ptc-miR408:pmrd
Length = 105
Score = 58.0 bits (29), Expect = 1e-09
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 51 tgttgtggctctactcatgcactgcctcttccctggc 87
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 60 tgttttggctctacccatgcactgcctcttccctggc 96
>54892_vvi-miR408:pmrd
Length = 107
Score = 56.0 bits (28), Expect = 4e-09
Identities = 37/40 (92%)
Strand = Plus / Plus
Query: 48 agctgttgtggctctactcatgcactgcctcttccctggc 87
||||||| | ||||||| ||||||||||||||||||||||
Sbjct: 58 agctgtttttgctctacccatgcactgcctcttccctggc 97
>53677_ptc-miRf11855-akr:pmrd
Length = 79
Score = 54.0 bits (27), Expect = 2e-08
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 51 tgttgtggctctactcatgcactgcctcttccctg 85
|||| ||||||||| ||||||||||||||||||||
Sbjct: 45 tgttttggctctacccatgcactgcctcttccctg 79
>54389_rco-miR408:pmrd
Length = 129
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
||||| ||||||||| | ||||||||||||||||||||
Sbjct: 73 ctgttttggctctacccctgcactgcctcttccctggc 110
>48142_ath-miRf11042-akr:pmrd
Length = 99
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
||||| || |||||| ||||||||||||||||||||||
Sbjct: 43 ctgttttgtctctacccatgcactgcctcttccctggc 6
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Minus
Query: 1 gacagggaacaggtagagcatggatggagtt 31
||||||||||| | ||||||||||| |||||
Sbjct: 94 gacagggaacaagcagagcatggattgagtt 64
>47031_ath-miR408:pmrd
Length = 218
Score = 52.0 bits (26), Expect = 7e-08
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
||||| || |||||| ||||||||||||||||||||||
Sbjct: 103 ctgttttgtctctacccatgcactgcctcttccctggc 140
Score = 38.2 bits (19), Expect = 0.001
Identities = 28/31 (90%)
Strand = Plus / Plus
Query: 1 gacagggaacaggtagagcatggatggagtt 31
||||||||||| | ||||||||||| |||||
Sbjct: 52 gacagggaacaagcagagcatggattgagtt 82
>51397_ppt-miR408b:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 64 ctcatgcactgcctcttccctggc 87
||||||||||||||||||||||||
Sbjct: 90 ctcatgcactgcctcttccctggc 113
>48584_gma-miR408a:pmrd
Length = 120
Score = 44.1 bits (22), Expect = 2e-05
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 50 ctgttgtggctctactcatgcactgcctcttccctggc 87
||||||||||| |||||||||||||| |||||||||
Sbjct: 83 ctgttgtggctacgctcatgcactgcctgttccctggc 120
>48428_cpt-miR408:pmrd
Length = 100
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 66 catgcactgcctcttccctggc 87
||||||||||||||||||||||
Sbjct: 69 catgcactgcctcttccctggc 90
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 5 gggaacaggtagagcatggatgga 28
||||||||| ||||||||||||||
Sbjct: 13 gggaacaggcagagcatggatgga 36
>46892_aqc-miR408:pmrd
Length = 87
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 66 catgcactgcctcttccctggc 87
||||||||||||||||||||||
Sbjct: 23 catgcactgcctcttccctggc 2
>54585_smo-miR408:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 atgcactgcctcttccctggc 87
|||||||||||||||||||||
Sbjct: 76 atgcactgcctcttccctggc 96
>51566_pta-miR408:pmrd
Length = 86
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 67 atgcactgcctcttccctggc 87
|||||||||||||||||||||
Sbjct: 64 atgcactgcctcttccctggc 84
>48317_bdi-miR408:pmrd
Length = 133
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 66 catgcactgcctcttccctgg 86
|||||||||||||||||||||
Sbjct: 68 catgcactgcctcttccctgg 88
>55104_zma-miR408:pmrd
Length = 191
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggc 87
||||||||||||||||||||
Sbjct: 153 tgcactgcctcttccctggc 172
>54690_tae-miR408:pmrd
Length = 187
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggc 87
||||||||||||||||||||
Sbjct: 137 tgcactgcctcttccctggc 156
>54649_sof-miR408d:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggc 87
||||||||||||||||||||
Sbjct: 177 tgcactgcctcttccctggc 196
>54648_sof-miR408c:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggc 87
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>54647_sof-miR408b:pmrd
Length = 286
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggc 87
||||||||||||||||||||
Sbjct: 248 tgcactgcctcttccctggc 267
>54646_sof-miR408a:pmrd
Length = 283
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggc 87
||||||||||||||||||||
Sbjct: 245 tgcactgcctcttccctggc 264
>54499_sbi-miR408:pmrd
Length = 205
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggc 87
||||||||||||||||||||
Sbjct: 185 tgcactgcctcttccctggc 204
>48975_osa-miR408:pmrd
Length = 213
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgcactgcctcttccctggc 87
||||||||||||||||||||
Sbjct: 154 tgcactgcctcttccctggc 173
