miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tagagctccttgaagtccaatagaggat 28
||||||||||||||||||||||||||||
Sbjct: 11 tagagctccttgaagtccaatagaggat 38
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatct 30
||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatct 40
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 52.0 bits (26), Expect = 2e-06
Identities = 44/50 (88%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatctgagtgggaatatcgagctgctg 52
|||||||||||||||||||||||| ||| | |||| | || |||||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctg 62
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagagg 26
||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagg 36
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaataga 24
||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaataga 22
