miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00688;MIR394;AARH01002882.1/31556-31654 3694:Populus
trichocarpa
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 1 ttggcattctgtccacctcccatctgtagaaat 33
|||||||||||||||||||| |||| |||||||
Sbjct: 14 ttggcattctgtccacctcctatctttagaaat 46
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 atggaggtgggcatactgccaa 76
||||||||||||||||||||||
Sbjct: 64 atggaggtgggcatactgccaa 85
>RF00688;MIR394;AM428484.2/52366-52463 29760:Vitis vinifera
Length = 98
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 ttggcattctgtccacctcccatct 25
|||||||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctcccatct 38
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 tggaggtgggcatactgccaa 76
|||||||||||||||||||||
Sbjct: 64 tggaggtgggcatactgccaa 84
>RF00688;MIR394;AARH01001039.1/148774-148676 3694:Populus
trichocarpa
Length = 99
Score = 48.1 bits (24), Expect = 2e-05
Identities = 31/32 (96%), Gaps = 1/32 (3%)
Strand = Plus / Plus
Query: 1 ttggcattctgtccacctcccatctgtagaaa 32
|||||||||||||||||| |||||||||||||
Sbjct: 14 ttggcattctgtccacct-ccatctgtagaaa 44
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 tggaggtgggcatactgccaa 76
|||||||||||||||||||||
Sbjct: 65 tggaggtgggcatactgccaa 85
>RF00688;MIR394;AASG02000377.1/56114-56246 3988:Ricinus communis
(castor bean)
Length = 133
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 atggaggtgggcatactgccaa 76
||||||||||||||||||||||
Sbjct: 98 atggaggtgggcatactgccaa 119
>RF00688;MIR394;AC189295.2/85926-86037 51351:Brassica rapa subsp.
pekinensis
Length = 112
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttggcattctgtccacctccc 21
|||||||||||||||||||||
Sbjct: 14 ttggcattctgtccacctccc 34
>RF00688;MIR394;BT066604.1/356-467 4577:Zea mays
Length = 112
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 ttggcattctgtccacctccc 21
|||||||||||||||||||||
Sbjct: 16 ttggcattctgtccacctccc 36
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 tggaggtgggcatactgccaa 76
|||||||||||||||||||||
Sbjct: 78 tggaggtgggcatactgccaa 98
>RF00688;MIR394;EU947221.1/92-210 4577:Zea mays
Length = 119
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 tggaggtgggcatactgccaa 76
|||||||||||||||||||||
Sbjct: 85 tggaggtgggcatactgccaa 105
>RF00688;MIR394;ABXC01002939.1/43674-43574 4558:Sorghum bicolor
(sorghum)
Length = 101
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 tggaggtgggcatactgccaa 76
|||||||||||||||||||||
Sbjct: 67 tggaggtgggcatactgccaa 87
>RF00688;MIR394;AACV01005112.1/32080-32191 39947:Oryza sativa
Japonica Group
Length = 112
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 56 tggaggtgggcatactgccaa 76
|||||||||||||||||||||
Sbjct: 78 tggaggtgggcatactgccaa 98
