miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00906;MIR1122;AL442105.2/58754-58619 4530:Oryza sativa (rice)
Length = 136
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 24 tactccatccgtcccagaatataagaagttttaaa 58
|||||||||||||||| |||||||||| |||||||
Sbjct: 132 tactccatccgtcccataatataagaaattttaaa 98
>RF00906;MIR1122;AP008213.1/15559796-15559689 39947:Oryza sativa
Japonica Group
Length = 108
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 222 ctaataattgttgtattttgggacggagggagtaa 256
|||| ||||||| ||||||||||||||||||||||
Sbjct: 71 ctaaaaattgttatattttgggacggagggagtaa 105
>RF00906;MIR1122;AAAA02032192.1/8285-8403 39946:Oryza sativa Indica
Group
Length = 119
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 227 aattgttgtattttgggacggagggagta 255
||||||| |||||||||||||||||||||
Sbjct: 87 aattgttatattttgggacggagggagta 115
>RF00906;MIR1122;AAAA02000488.1/65172-65284 39946:Oryza sativa
Indica Group
Length = 113
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 20 taactactccatccgtcccagaatataag 48
|||||||||||||||||||| ||||||||
Sbjct: 113 taactactccatccgtcccaaaatataag 85
>RF00906;MIR1122;AAAA02032340.1/20991-20868 39946:Oryza sativa
Indica Group
Length = 124
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 227 aattgttgtattttgggacggagggagta 255
||||||| |||||||||||||||||||||
Sbjct: 92 aattgttatattttgggacggagggagta 120
>RF00906;MIR1122;AP008217.1/18229594-18229693 39947:Oryza sativa
Japonica Group
Length = 100
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 227 aattgttgtattttgggacggagggagta 255
||||||| |||||||||||||||||||||
Sbjct: 68 aattgttatattttgggacggagggagta 96
>RF00906;MIR1122;AACV01023162.1/1695-1577 39947:Oryza sativa
Japonica Group
Length = 119
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 227 aattgttgtattttgggacggagggagta 255
||||||| |||||||||||||||||||||
Sbjct: 87 aattgttatattttgggacggagggagta 115
>RF00906;MIR1122;AACV01021484.1/7074-6919 39947:Oryza sativa
Japonica Group
Length = 156
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 24 tactccatccgtcccagaatataagaag 51
|||||||||||||||| |||||||||||
Sbjct: 152 tactccatccgtcccaaaatataagaag 125
>RF00906;MIR1122;AP008218.1/2340117-2339983 39947:Oryza sativa
Japonica Group
Length = 135
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 228 attgttgtattttgggacggagggagta 255
|||||| |||||||||||||||||||||
Sbjct: 32 attgttatattttgggacggagggagta 5
>RF00906;MIR1122;AAAA02029450.1/6704-6860 39946:Oryza sativa Indica
Group
Length = 157
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 24 tactccatccgtcccagaatataagaag 51
|||||||||||||||| |||||||||||
Sbjct: 153 tactccatccgtcccaaaatataagaag 126
>RF00906;MIR1122;AP004994.2/69469-69314 39947:Oryza sativa Japonica
Group
Length = 156
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 232 ttgtattttgggacggagggagta 255
||||||||||||||||||||||||
Sbjct: 129 ttgtattttgggacggagggagta 152
>RF00906;MIR1122;AAAA02006215.1/494-605 39946:Oryza sativa Indica
Group
Length = 112
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 232 ttgtattttgggacggagggagta 255
||||||||||||||||||||||||
Sbjct: 85 ttgtattttgggacggagggagta 108
>RF00906;MIR1122;AAAA02013097.1/8926-9081 39946:Oryza sativa Indica
Group
Length = 156
Score = 48.1 bits (24), Expect = 7e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 229 ttgttgtattttgggacggagggagtaa 256
||||| ||||||||||||||||||||||
Sbjct: 31 ttgttatattttgggacggagggagtaa 4
>RF00906;MIR1122;AC229754.2/94242-94126 63629:Oryza minuta
Length = 117
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 235 tattttgggacggagggagtaaat 258
||||||||||||||||||||||||
Sbjct: 93 tattttgggacggagggagtaaat 116
>RF00906;MIR1122;AAAA02018670.1/1486-1331 39946:Oryza sativa Indica
Group
Length = 156
Score = 48.1 bits (24), Expect = 7e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 232 ttgtattttgggacggagggagta 255
||||||||||||||||||||||||
Sbjct: 129 ttgtattttgggacggagggagta 152
>RF00906;MIR1122;AAAA02022570.1/2584-2456 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 22 actactccatccgtcccagaatataag 48
|||||||||||||||||| ||||||||
Sbjct: 3 actactccatccgtcccataatataag 29
>RF00906;MIR1122;AAAA02007751.1/21104-20995 39946:Oryza sativa
Indica Group
Length = 110
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 222 ctaataattgttgtattttgggacggagggagtaa 256
|||| ||||||| |||||||||||||||| |||||
Sbjct: 73 ctaaaaattgttatattttgggacggaggtagtaa 107
>RF00906;MIR1122;AAAA02007975.1/29302-29380 39946:Oryza sativa
Indica Group
Length = 79
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 229 ttgttgtattttgggacggagggagta 255
||||| |||||||||||||||||||||
Sbjct: 31 ttgttatattttgggacggagggagta 5
>RF00906;MIR1122;AC097277.6/29364-29210 39947:Oryza sativa Japonica
Group
Length = 155
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 tactccatccgtcccagaatataagaa 50
|||||| ||||||||||||||||||||
Sbjct: 151 tactccctccgtcccagaatataagaa 125
>RF00906;MIR1122;AP008208.1/1166338-1166449 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 221 gctaataattgttgtattttgggacggagggagta 255
||||| ||||||| |||||||||||||||| ||||
Sbjct: 39 gctaaaaattgttatattttgggacggaggtagta 5
>RF00906;MIR1122;AP008218.1/11741623-11741744 39947:Oryza sativa
Japonica Group
Length = 122
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 21 aactactccatccgtcccagaatataagaagtttt 55
||||||||| ||||||| | |||||||||||||||
Sbjct: 2 aactactccctccgtcctaaaatataagaagtttt 36
>RF00906;MIR1122;AP008209.1/22479538-22479413 39947:Oryza sativa
Japonica Group
Length = 126
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 24 tactccatccgtcccagaatataagaa 50
|||||||||||||||| ||||||||||
Sbjct: 122 tactccatccgtcccaaaatataagaa 96
>RF00906;MIR1122;AL845342.2/23218-23105 4530:Oryza sativa (rice)
Length = 114
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 229 ttgttgtattttgggacggagggagta 255
||||| |||||||||||||||||||||
Sbjct: 84 ttgttatattttgggacggagggagta 110
>RF00906;MIR1122;CT832702.1/1285-1384 39946:Oryza sativa Indica
Group
Length = 100
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 221 gctaataattgttgtattttgggacggagggagta 255
||||| ||||| | |||||||||||||||||||||
Sbjct: 62 gctaaaaattgctatattttgggacggagggagta 96
>RF00906;MIR1122;CT827956.1/52813-52688 4530:Oryza sativa (rice)
Length = 126
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 tactccatccgtcccagaatataagaa 50
|||||||||||||||| ||||||||||
Sbjct: 5 tactccatccgtcccaaaatataagaa 31
>RF00906;MIR1122;AAAA02022081.1/35373-35236 39946:Oryza sativa
Indica Group
Length = 138
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 24 tactccatccgtcccagaatataagaa 50
|||||||||||||||| ||||||||||
Sbjct: 5 tactccatccgtcccaaaatataagaa 31
>RF00906;MIR1122;AP008209.1/27314174-27314047 39947:Oryza sativa
Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 23 ctactccatccgtcccagaatataaga 49
||||||||||||||||| |||||||||
Sbjct: 125 ctactccatccgtcccaaaatataaga 99
>RF00906;MIR1122;AP008210.1/27511419-27511308 39947:Oryza sativa
Japonica Group
Length = 112
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 aactactccatccgtcccagaatataa 47
||||||||||||||||||| |||||||
Sbjct: 2 aactactccatccgtcccaaaatataa 28
>RF00906;MIR1122;AL606691.4/149690-149555 39947:Oryza sativa
Japonica Group
Length = 136
Score = 46.1 bits (23), Expect = 3e-04
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 24 tactccatccgtcccagaatataagaagttttaaa 58
|||||||||||||||| |||||||| | |||||||
Sbjct: 132 tactccatccgtcccataatataaggaattttaaa 98
>RF00906;MIR1122;AAAA02018626.1/12551-12423 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 3e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 229 ttgttgtattttgggacggagggagta 255
||||| |||||||||||||||||||||
Sbjct: 99 ttgttttattttgggacggagggagta 125
>RF00906;MIR1122;AP008207.1/298223-298350 39947:Oryza sativa
Japonica Group
Length = 128
Score = 46.1 bits (23), Expect = 3e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 24 tactccatccgtcccagaatata 46
|||||||||||||||||||||||
Sbjct: 124 tactccatccgtcccagaatata 102
