miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;ABIM01017407.1/6156-6071 3649:Carica papaya
(papaya)
Length = 86
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 46 tggcctttgtggatggcgtgcgaggagccatgc 78
||||||| |||||||||||||||||||||||||
Sbjct: 50 tggccttggtggatggcgtgcgaggagccatgc 82
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccat 25
>RF00247;mir-160;EU548617.1/275-359 3702:Arabidopsis thaliana
(thale cress)
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 66/78 (84%), Gaps = 1/78 (1%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcttagtccatttagtattagatggcctttgtggatg 60
||||||||||||||||||||| |||| || |||| |||| | |||| ||| |||||||
Sbjct: 5 gcctggctccctgtatgccatatgctgagcccatcgagta-tcgatgacctccgtggatg 63
Query: 61 gcgtgcgaggagccatgc 78
|||| ||||||||||||
Sbjct: 64 gcgtatgaggagccatgc 81
>RF00247;mir-160;ABIM01012188.1/1387-1471 3649:Carica papaya
(papaya)
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgc 29
>RF00247;mir-160;AARH01003540.1/65975-65890 3694:Populus
trichocarpa
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgc 29
>RF00247;mir-160;AC196190.2/61996-61908 4081:Solanum lycopersicum
Length = 89
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgc 29
>RF00247;mir-160;CAAP02000723.1/67959-67874 29760:Vitis vinifera
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgc 29
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 ggatggcgtgcgaggagccatgc 78
|||||||||||||||||||||||
Sbjct: 60 ggatggcgtgcgaggagccatgc 82
>RF00247;mir-160;CAAP02000343.1/40092-40007 29760:Vitis vinifera
Length = 86
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttgc 29
Score = 46.1 bits (23), Expect = 6e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 44 gatggcctttgtggatggcgtgcgaggagccatgc 78
||||||||| ||||||||||| ||||||||||||
Sbjct: 48 gatggccttcgtggatggcgtatgaggagccatgc 82
>RF00247;mir-160;AASG02001090.1/34048-34133 3988:Ricinus communis
(castor bean)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttg 24
||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttg 28
>RF00247;mir-160;AC148995.2/105120-105205 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttg 24
||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttg 28
>RF00247;mir-160;BABK01026793.1/1193-1108 34305:Lotus japonicus
Length = 86
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttg 24
||||||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccatttg 28
>RF00247;mir-160;AY728427.1/2-87 3694:Populus trichocarpa
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
||||||||||||| |||||||||||
Sbjct: 5 gcctggctccctgcatgccatttgc 29
>RF00247;mir-160;AC126015.41/7942-7857 3880:Medicago truncatula
(barrel medic)
Length = 86
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccat 21
|||||||||||||||||||||
Sbjct: 5 gcctggctccctgtatgccat 25
>RF00247;mir-160;ABXC01000057.1/79229-79124 4558:Sorghum bicolor
(sorghum)
Length = 106
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcttag 29
|||||||||||||||||||| | ||||||
Sbjct: 5 gcctggctccctgtatgccactcgcttag 33
>RF00247;mir-160;DQ455766.1/101-12 169985:Oenocarpus bataua
Length = 90
Score = 42.1 bits (21), Expect = 0.001
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgcttag 29
|||||||||||||||||||| | ||||||
Sbjct: 5 gcctggctccctgtatgccactggcttag 33
>RF00247;mir-160;ABEU01014597.1/43590-43504 145481:Physcomitrella
patens subsp. patens
Length = 87
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 1 gcctggctccctgtatgccatttgc 25
|||||||||||||||||||| ||||
Sbjct: 5 gcctggctccctgtatgccacttgc 29
