miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45171_miR171:micropc
Length = 83
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcagatcttcccgaccaaaccacgcaacaactctcttagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcattcagatcttcccgaccaaaccacgcaacaactctcttagata 60
Query: 61 tctgattgagccgcgtcaatatc 83
|||||||||||||||||||||||
Sbjct: 61 tctgattgagccgcgtcaatatc 83
>44859_miR171:micropc
Length = 84
Score = 165 bits (83), Expect = 6e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcagatcttcccgaccaaaccacgcaacaactctcttagata 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatattggcctggttcattcagatcttcccgaccaaaccacgcaacaactctcttagata 60
Query: 61 tctgattgagccgcgtcaatatc 83
|||||||||||||||||||||||
Sbjct: 61 tctgattgagccgcgtcaatatc 83
>46581_miR171:micropc
Length = 81
Score = 161 bits (81), Expect = 9e-41
Identities = 81/81 (100%)
Strand = Plus / Plus
Query: 2 atattggcctggttcattcagatcttcccgaccaaaccacgcaacaactctcttagatat 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atattggcctggttcattcagatcttcccgaccaaaccacgcaacaactctcttagatat 60
Query: 62 ctgattgagccgcgtcaatat 82
|||||||||||||||||||||
Sbjct: 61 ctgattgagccgcgtcaatat 81
>46684_miR171:micropc
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatc 83
|||||||||||||||||||||
Sbjct: 59 tgattgagccgcgtcaatatc 79
>46553_miR171:micropc
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatc 83
|||||||||||||||||||||
Sbjct: 61 tgattgagccgcgtcaatatc 81
>46163_miR171:micropc
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatc 83
|||||||||||||||||||||
Sbjct: 62 tgattgagccgcgtcaatatc 82
>45361_miR171:micropc
Length = 79
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatc 83
|||||||||||||||||||||
Sbjct: 59 tgattgagccgcgtcaatatc 79
>45160_miR171:micropc
Length = 81
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatatc 83
|||||||||||||||||||||
Sbjct: 61 tgattgagccgcgtcaatatc 81
>45662_miR171:micropc
Length = 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatat 82
||||||||||||||||||||
Sbjct: 59 tgattgagccgcgtcaatat 78
>45488_miR171:micropc
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgtcaatatc 83
||||||||||||||||||||
Sbjct: 81 gattgagccgcgtcaatatc 100
>45337_miR171:micropc
Length = 79
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 63 tgattgagccgcgtcaatat 82
||||||||||||||||||||
Sbjct: 60 tgattgagccgcgtcaatat 79
>44972_miR171:micropc
Length = 102
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgtcaatatc 83
||||||||||||||||||||
Sbjct: 82 gattgagccgcgtcaatatc 101
>44829_miR171:micropc
Length = 100
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgtcaatatc 83
||||||||||||||||||||
Sbjct: 81 gattgagccgcgtcaatatc 100
>46772_miR171:micropc
Length = 122
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcaga 23
||||||||||||||||| |||||
Sbjct: 1 gatattggcctggttcactcaga 23
>46672_miR171:micropc
Length = 123
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcaga 23
||||||||||||||||| |||||
Sbjct: 1 gatattggcctggttcactcaga 23
>46593_miR171:micropc
Length = 80
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 attgagccgcgtcaatatc 83
|||||||||||||||||||
Sbjct: 62 attgagccgcgtcaatatc 80
>45955_miR171:micropc
Length = 98
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 64 gattgagccgcgtcaatat 82
|||||||||||||||||||
Sbjct: 80 gattgagccgcgtcaatat 98
>45683_miR171:micropc
Length = 122
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 1 gatattggcctggttcattcaga 23
||||||||||||||||| |||||
Sbjct: 1 gatattggcctggttcactcaga 23
>45523_miR171:micropc
Length = 82
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 attgagccgcgtcaatatc 83
|||||||||||||||||||
Sbjct: 63 attgagccgcgtcaatatc 81
>45177_miR171:micropc
Length = 79
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 65 attgagccgcgtcaatatc 83
|||||||||||||||||||
Sbjct: 61 attgagccgcgtcaatatc 79
