miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABIM01022236.1/33140-32940 3649:Carica papaya
(papaya)
Length = 201
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 139 ttttggtattggagtgaagggagctc 164
||||||||||||||||||||||||||
Sbjct: 162 ttttggtattggagtgaagggagctc 187
Score = 46.1 bits (23), Expect = 2e-04
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Plus
Query: 1 tggagctctctgcactccagtgttg-aaggaggtgatgg 38
|||||||||||| |||||||| ||| |||||||||||||
Sbjct: 11 tggagctctctgaactccagtcttgaaaggaggtgatgg 49
>RF00638;MIR159;AARH01006065.1/468133-468327 3694:Populus
trichocarpa
Length = 195
Score = 50.1 bits (25), Expect = 1e-05
Identities = 38/41 (92%), Gaps = 1/41 (2%)
Strand = Plus / Plus
Query: 126 ggttgccttgatctttt-ggtattggagtgaagggagctcc 165
||||||||||||||||| ||| |||| ||||||||||||||
Sbjct: 142 ggttgccttgatctttttggtcttggggtgaagggagctcc 182
>RF00638;MIR159;CAAP02000074.1/110075-110270 29760:Vitis vinifera
Length = 196
Score = 50.1 bits (25), Expect = 1e-05
Identities = 32/33 (96%), Gaps = 1/33 (3%)
Strand = Plus / Plus
Query: 133 ttgatcttt-tggtattggagtgaagggagctc 164
||||||||| |||||||||||||||||||||||
Sbjct: 150 ttgatctttctggtattggagtgaagggagctc 182
>RF00638;MIR159;AM454957.2/557-754 29760:Vitis vinifera
Length = 198
Score = 48.1 bits (24), Expect = 4e-05
Identities = 37/40 (92%), Gaps = 1/40 (2%)
Strand = Plus / Plus
Query: 126 ggttgccttgatcttt-tggtattggagtgaagggagctc 164
|||||||||||||||| ||| ||||||||||||||||||
Sbjct: 145 ggttgccttgatctttctggccttggagtgaagggagctc 184
>RF00638;MIR159;AARH01006065.1/463210-463415 3694:Populus
trichocarpa
Length = 206
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 138 cttttggtattggagtgaagggagctc 164
||||| |||||||||||||||||||||
Sbjct: 166 ctttttgtattggagtgaagggagctc 192
