miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 63.9 bits (32), Expect = 7e-10
Identities = 53/60 (88%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatctgagtgggaagatagtgctgctggcttatggat 62
|||||||||||||||||||||||| ||| | |||| |||| | ||||||| |||||||||
Sbjct: 13 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 72
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tagagctccttgaagtccaatagaggat 28
||||||||||||||||||||||||||||
Sbjct: 11 tagagctccttgaagtccaatagaggat 38
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 56.0 bits (28), Expect = 2e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatct 30
||||||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggatct 40
Score = 48.1 bits (24), Expect = 4e-05
Identities = 43/48 (89%), Gaps = 1/48 (2%)
Strand = Plus / Plus
Query: 85 ttttgtataggctttgtggcttgcataacccaggagctttattacctt 132
||||| |||||||| |||||||||||| | ||||||||| ||||||||
Sbjct: 101 ttttggataggctt-gtggcttgcatatctcaggagcttcattacctt 147
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagagg 26
||||||||||||||||||||||||
Sbjct: 13 gagctccttgaagtccaatagagg 36
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaataga 24
||||||||||||||||||||||
Sbjct: 1 gagctccttgaagtccaataga 22
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 102 ggcttgcataacccaggagctttattacct 131
|||||||||| | |||||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacct 130
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 44.1 bits (22), Expect = 6e-04
Identities = 55/66 (83%)
Strand = Plus / Plus
Query: 3 gagctccttgaagtccaatagaggatctgagtgggaagatagtgctgctggcttatggat 62
|||||||||||||||||| ||| ||||| | || |||| | ||||||| | |||||||
Sbjct: 13 gagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggat 72
Query: 63 tcctca 68
||||||
Sbjct: 73 tcctca 78
