miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46310_miR398:micropc
Length = 113
Score = 220 bits (111), Expect = 2e-58
Identities = 111/111 (100%)
Strand = Plus / Plus
Query: 1 aggagtgagcctgagaacacaagctgaattggtttgaattgccatatcacatactgatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 aggagtgagcctgagaacacaagctgaattggtttgaattgccatatcacatactgatat 61
Query: 61 ctggtataggctttatgttgctaatttattttgtgttctcaggtcacccct 111
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 62 ctggtataggctttatgttgctaatttattttgtgttctcaggtcacccct 112
>45772_miR398:micropc
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 83 aatttattttgtgttctcaggtcacccct 111
|||||| ||||||||||||||||||||||
Sbjct: 63 aatttactttgtgttctcaggtcacccct 91
>45427_miR398:micropc
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 83 aatttattttgtgttctcaggtcacccct 111
|||||| ||||||||||||||||||||||
Sbjct: 66 aatttactttgtgttctcaggtcacccct 94
>45083_miR398:micropc
Length = 92
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 83 aatttattttgtgttctcaggtcacccct 111
|||||| ||||||||||||||||||||||
Sbjct: 63 aatttactttgtgttctcaggtcacccct 91
>44964_miR398:micropc
Length = 94
Score = 50.1 bits (25), Expect = 3e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 83 aatttattttgtgttctcaggtcacccct 111
|||||| ||||||||||||||||||||||
Sbjct: 66 aatttactttgtgttctcaggtcacccct 94
>46478_miR398:micropc
Length = 105
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 84 tttgtgttctcaggtcacccct 105
>46384_miR398:micropc
Length = 107
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 85 tttgtgttctcaggtcacccct 106
>46357_miR398:micropc
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 118 tttgtgttctcaggtcacccct 139
>46128_miR398:micropc
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 118 tttgtgttctcaggtcacccct 139
>45917_miR398:micropc
Length = 140
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 119 tttgtgttctcaggtcacccct 140
>45602_miR398:micropc
Length = 142
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 121 tttgtgttctcaggtcacccct 142
>45412_miR398:micropc
Length = 143
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 121 tttgtgttctcaggtcacccct 142
>45213_miR398:micropc
Length = 141
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 119 tttgtgttctcaggtcacccct 140
>45118_miR398:micropc
Length = 139
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 118 tttgtgttctcaggtcacccct 139
>46761_miR398:micropc
Length = 133
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 ttgtgttctcaggtcacccct 111
|||||||||||||||||||||
Sbjct: 112 ttgtgttctcaggtcacccct 132
>46499_miR398:micropc
Length = 67
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 ttgtgttctcaggtcacccct 111
|||||||||||||||||||||
Sbjct: 46 ttgtgttctcaggtcacccct 66
>46491_miR398:micropc
Length = 131
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 ttgtgttctcaggtcacccct 111
|||||||||||||||||||||
Sbjct: 111 ttgtgttctcaggtcacccct 131
>46328_miR398:micropc
Length = 138
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 ttgtgttctcaggtcacccct 111
|||||||||||||||||||||
Sbjct: 118 ttgtgttctcaggtcacccct 138
>45871_miR398:micropc
Length = 140
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 ttgtgttctcaggtcacccct 111
|||||||||||||||||||||
Sbjct: 119 ttgtgttctcaggtcacccct 139
>45288_miR398:micropc
Length = 65
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 91 ttgtgttctcaggtcacccct 111
|||||||||||||||||||||
Sbjct: 45 ttgtgttctcaggtcacccct 65
>46703_miR398:micropc
Length = 149
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgtgttctcaggtcacccct 111
||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149
>46124_miR398:micropc
Length = 97
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgtgttctcaggtcacccct 111
||||||||||||||||||||
Sbjct: 77 tgtgttctcaggtcacccct 96
>46028_miR398:micropc
Length = 150
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgtgttctcaggtcacccct 111
||||||||||||||||||||
Sbjct: 130 tgtgttctcaggtcacccct 149
>45706_miR398:micropc
Length = 106
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgtgttctcaggtcacccct 111
||||||||||||||||||||
Sbjct: 87 tgtgttctcaggtcacccct 106
>45380_miR398:micropc
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgtgttctcaggtcacccct 111
||||||||||||||||||||
Sbjct: 88 tgtgttctcaggtcacccct 107
>45370_miR398:micropc
Length = 95
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 92 tgtgttctcaggtcacccct 111
||||||||||||||||||||
Sbjct: 76 tgtgttctcaggtcacccct 95
