miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AP006112.1/24509-24640 34305:Lotus japonicus
Length = 132
Score = 101 bits (51), Expect = 2e-21
Identities = 97/111 (87%), Gaps = 1/111 (0%)
Strand = Plus / Plus
Query: 1 aggagtgagcctgagaacacaagctgaattggtttgaattgccatatcacatactgatat 60
|||||||||| | ||||||||||||| |||||||||||||| |||||| ||||| ||
Sbjct: 12 aggagtgagcttaagaacacaagctgcattggtttgaattgttatatcatatactagaat 71
Query: 61 ctggtataggctttatgttgctaatttattttgtgttctcaggtcacccct 111
|| ||||| ||||||||| ||||||||| |||||||||||||||||||||
Sbjct: 72 ctagtatat-ctttatgttactaatttatcttgtgttctcaggtcacccct 121
>RF00695;MIR398;CR962131.2/106004-106111 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 attttgtgttctcaggtcacccct 111
||||||||||||||||||||||||
Sbjct: 74 attttgtgttctcaggtcacccct 97
>RF00695;MIR398;AM470404.1/7821-7717 29760:Vitis vinifera
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 88 attttgtgttctcaggtcacccct 111
||||||||||||||||||||||||
Sbjct: 71 attttgtgttctcaggtcacccct 94
>RF00695;MIR398;EU549614.1/303-407 3702:Arabidopsis thaliana (thale
cress)
Length = 105
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 89 ttttgtgttctcaggtcacccct 111
|||||||||||||||||||||||
Sbjct: 72 ttttgtgttctcaggtcacccct 94
>RF00695;MIR398;ABIM01000776.1/2623-2725 3649:Carica papaya (papaya)
Length = 103
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 90 tttgtgttctcaggtcacccct 111
||||||||||||||||||||||
Sbjct: 71 tttgtgttctcaggtcacccct 92
