miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AASG02006362.1/4770-4867 3988:Ricinus communis
(castor bean)
Length = 98
Score = 95.6 bits (48), Expect = 8e-20
Identities = 70/76 (92%), Gaps = 1/76 (1%)
Strand = Plus / Plus
Query: 3 gatgttggaacggctcaatcaaatcaaatctccc-aagaattgggtcctttagtttgatt 61
|||||||||| ||||||||||||||||||||||| ||| |||||||||||| | |||||
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctcccaaagttttgggtcctttaatctgatt 70
Query: 62 gagccgtgccaatatc 77
||||||||||||||||
Sbjct: 71 gagccgtgccaatatc 86
>RF00643;MIR171_1;CAAP02001068.1/13036-12938 29760:Vitis vinifera
Length = 99
Score = 95.6 bits (48), Expect = 8e-20
Identities = 72/79 (91%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 3 gatgttggaacggctcaatcaaatcaaatctcccaa--gaattgggtcctttagtttgat 60
|||||||||| ||||||||||||||||||||||||| | |||||||||||| | ||||
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctcccaagggttttgggtcctttaatctgat 70
Query: 61 tgagccgtgccaatatcat 79
|||||||||||||||||||
Sbjct: 71 tgagccgtgccaatatcat 89
>RF00643;MIR171_1;CAAP02002421.1/13383-13479 29760:Vitis vinifera
Length = 97
Score = 67.9 bits (34), Expect = 2e-11
Identities = 67/78 (85%)
Strand = Plus / Plus
Query: 2 tgatgttggaacggctcaatcaaatcaaatctcccaagaattgggtcctttagtttgatt 61
||||||||| |||||||||||||| |||| || ||| ||| |||||||| | |||||
Sbjct: 10 tgatgttgggacggctcaatcaaaccaaagatctcaatggttgagtcctttaatctgatt 69
Query: 62 gagccgtgccaatatcat 79
||||||||||||||||||
Sbjct: 70 gagccgtgccaatatcat 87
>RF00643;MIR171_1;ABIM01004247.1/37375-37272 3649:Carica papaya
(papaya)
Length = 104
Score = 65.9 bits (33), Expect = 7e-11
Identities = 70/83 (84%), Gaps = 7/83 (8%)
Strand = Plus / Plus
Query: 3 gatgttggaacggctcaatcaaatcaaatctcccaag-------aattgggtcctttagt 55
|||||||||| |||||||||||||||||||||| ||| ||||||| |||| |
Sbjct: 11 gatgttggaatggctcaatcaaatcaaatctccaaagtctttgattttgggtcttttaat 70
Query: 56 ttgattgagccgtgccaatatca 78
|||||||||||||||||||||||
Sbjct: 71 ttgattgagccgtgccaatatca 93
>RF00643;MIR171_1;ABIM01014311.1/7039-6927 3649:Carica papaya
(papaya)
Length = 113
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 50 tttagtttgattgagccgtgccaatatcat 79
|||||| |||||||||||||||||||||||
Sbjct: 76 tttagtctgattgagccgtgccaatatcat 105
>RF00643;MIR171_1;BABK01022931.1/1462-1563 34305:Lotus japonicus
Length = 102
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 49 ctttagtttgattgagccgtgccaatatca 78
||||||| ||||||||||||||||||||||
Sbjct: 62 ctttagtctgattgagccgtgccaatatca 91
>RF00643;MIR171_1;ABIM01020876.1/9287-9189 3649:Carica papaya
(papaya)
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatatca 78
|||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatca 88
>RF00643;MIR171_1;AY871043.1/2-86 3694:Populus trichocarpa
Length = 85
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 42 ttgggtcctttagtttgattgagccgtgccaatatca 78
||||||| |||| | ||||||||||||||||||||||
Sbjct: 48 ttgggtcttttaatctgattgagccgtgccaatatca 84
>RF00643;MIR171_1;AY728470.1/5-86 3694:Populus trichocarpa
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatatca 78
|||||||||||||||||||||||||
Sbjct: 57 gtttgattgagccgtgccaatatca 81
>RF00643;MIR171_1;AASG02000735.1/28318-28416 3988:Ricinus communis
(castor bean)
Length = 99
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatatca 78
|||||||||||||||||||||||||
Sbjct: 64 gtttgattgagccgtgccaatatca 88
>RF00643;MIR171_1;AM446221.1/52246-52149 29760:Vitis vinifera
Length = 98
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatatca 78
|||||||||||||||||||||||||
Sbjct: 63 gtttgattgagccgtgccaatatca 87
>RF00643;MIR171_1;ABXC01000089.1/209731-209588 4558:Sorghum bicolor
(sorghum)
Length = 144
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatatca 78
|||||||||||||||||||||||||
Sbjct: 109 gtttgattgagccgtgccaatatca 133
>RF00643;MIR171_1;ABIM01016020.1/2222-2123 3649:Carica papaya
(papaya)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89
>RF00643;MIR171_1;EU549150.1/415-315 3702:Arabidopsis thaliana
(thale cress)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90
>RF00643;MIR171_1;AY728466.1/3-80 3694:Populus trichocarpa
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 63/76 (82%)
Strand = Plus / Plus
Query: 2 tgatgttggaacggctcaatcaaatcaaatctcccaagaattgggtcctttagtttgatt 61
||||||||| | |||||||||||||||| | | ||| |||||| |||| | |||||
Sbjct: 1 tgatgttggcagagctcaatcaaatcaaagcactcaatggttgggttctttcatctgatt 60
Query: 62 gagccgtgccaatatc 77
||||||||||||||||
Sbjct: 61 gagccgtgccaatatc 76
>RF00643;MIR171_1;AASG02001674.1/19617-19518 3988:Ricinus communis
(castor bean)
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89
>RF00643;MIR171_1;AC150705.17/109871-109755 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatatc 77
||||||||||||||||||||||||
Sbjct: 82 gtttgattgagccgtgccaatatc 105
>RF00643;MIR171_1;AC134967.20/116067-116170 3880:Medicago
truncatula (barrel medic)
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgtgccaatatca 93
>RF00643;MIR171_1;BABK01058807.1/722-623 34305:Lotus japonicus
Length = 100
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 66 tttgattgagccgtgccaatatca 89
>RF00643;MIR171_1;BABK01108397.1/266-409 34305:Lotus japonicus
Length = 144
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatatc 77
||||||||||||||||||||||||
Sbjct: 109 gtttgattgagccgtgccaatatc 132
>RF00643;MIR171_1;AC215372.2/27425-27538 4081:Solanum lycopersicum
Length = 114
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 54 gtttgattgagccgtgccaatatc 77
||||||||||||||||||||||||
Sbjct: 79 gtttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;AC219214.1/21177-21278 4081:Solanum lycopersicum
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatca 91
>RF00643;MIR171_1;AM449096.1/12478-12578 29760:Vitis vinifera
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90
>RF00643;MIR171_1;ABXC01004438.1/173968-173868 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90
>RF00643;MIR171_1;AY551250.1/5-106 4530:Oryza sativa (rice)
Length = 102
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 68 tttgattgagccgtgccaatatca 91
>RF00643;MIR171_1;AL606645.2/80760-80660 39947:Oryza sativa
Japonica Group
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatca 78
||||||||||||||||||||||||
Sbjct: 67 tttgattgagccgtgccaatatca 90
>RF00643;MIR171_1;ABIM01002570.1/7961-8103 3649:Carica papaya
(papaya)
Length = 143
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatc 77
|||||||||||||||||||||||
Sbjct: 109 tttgattgagccgtgccaatatc 131
>RF00643;MIR171_1;AY728471.1/4-115 3694:Populus trichocarpa
Length = 112
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatc 77
|||||||||||||||||||||||
Sbjct: 88 tttgattgagccgtgccaatatc 110
>RF00643;MIR171_1;AASG02000279.1/67999-67862 3988:Ricinus communis
(castor bean)
Length = 138
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatc 77
|||||||||||||||||||||||
Sbjct: 104 tttgattgagccgtgccaatatc 126
>RF00643;MIR171_1;AASG02019837.1/638-762 3988:Ricinus communis
(castor bean)
Length = 125
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatc 77
|||||||||||||||||||||||
Sbjct: 91 tttgattgagccgtgccaatatc 113
>RF00643;MIR171_1;BABK01005968.1/2486-2599 34305:Lotus japonicus
Length = 114
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatc 77
|||||||||||||||||||||||
Sbjct: 80 tttgattgagccgtgccaatatc 102
>RF00643;MIR171_1;AM486682.2/2891-2758 29760:Vitis vinifera
Length = 134
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatc 77
|||||||||||||||||||||||
Sbjct: 100 tttgattgagccgtgccaatatc 122
>RF00643;MIR171_1;CAAP02019255.1/437-320 29760:Vitis vinifera
Length = 118
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatatc 77
|||||||||||||||||||||||
Sbjct: 84 tttgattgagccgtgccaatatc 106
>RF00643;MIR171_1;BT069726.1/119-252 4577:Zea mays
Length = 134
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 ttgattgagccgtgccaatatca 78
|||||||||||||||||||||||
Sbjct: 101 ttgattgagccgtgccaatatca 123
>RF00643;MIR171_1;BT018211.1/119-253 4577:Zea mays
Length = 135
Score = 46.1 bits (23), Expect = 6e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 ttgattgagccgtgccaatatca 78
|||||||||||||||||||||||
Sbjct: 102 ttgattgagccgtgccaatatca 124
>RF00643;MIR171_1;CR962130.3/48254-48370 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 tttgattgagccgtgccaatat 76
||||||||||||||||||||||
Sbjct: 83 tttgattgagccgtgccaatat 104
>RF00643;MIR171_1;BT035609.1/466-577 4577:Zea mays
Length = 112
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatatca 78
||||||||||||||||||||||
Sbjct: 80 tgattgagccgtgccaatatca 101
>RF00643;MIR171_1;ABXC01004625.1/104342-104456 4558:Sorghum bicolor
(sorghum)
Length = 115
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatatca 78
||||||||||||||||||||||
Sbjct: 83 tgattgagccgtgccaatatca 104
>RF00643;MIR171_1;AACV01007865.1/2509-2381 39947:Oryza sativa
Japonica Group
Length = 129
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 57 tgattgagccgtgccaatatca 78
||||||||||||||||||||||
Sbjct: 97 tgattgagccgtgccaatatca 118
