miRNEST 2.0, an integrative microRNA resource :: BLAST
>54777_vvi-miR159c:pmrd
Length = 190
Score = 95.6 bits (48), Expect = 1e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||||| |||| | ||||||||||||||||||| |||||||
Sbjct: 11 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 70
Query: 61 accacagccctatccc 76
|||||||||||||||
Sbjct: 71 cccacagccctatccc 86
Score = 85.7 bits (43), Expect = 1e-17
Identities = 72/81 (88%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 110 ttggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatcct 169
|||||||||||||||||||||||||||| |||||| ||||| | | | |||||||||
Sbjct: 101 ttggataggcttgtggcttgcatatctcaggagctgcattatccaagt---ttagatcct 157
Query: 170 tgtttggattgaagggagctc 190
|||||||||||||||||||||
Sbjct: 158 tgtttggattgaagggagctc 178
>52093_ptc-miRf10271-akr:pmrd
Length = 174
Score = 83.8 bits (42), Expect = 4e-17
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||||||
Sbjct: 8 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 67
Query: 61 accacagccctatc 74
|||||| ||||||
Sbjct: 68 -ccacagtcctatc 80
Score = 65.9 bits (33), Expect = 1e-11
Identities = 68/79 (86%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 112 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 171
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 92 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 148
Query: 172 tttggattgaagggagctc 190
|||||||||||||||||||
Sbjct: 149 tttggattgaagggagctc 167
>51604_ptc-miR159c:pmrd
Length = 183
Score = 83.8 bits (42), Expect = 4e-17
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 72
Query: 61 accacagccctatc 74
|||||| ||||||
Sbjct: 73 -ccacagtcctatc 85
Score = 65.9 bits (33), Expect = 1e-11
Identities = 68/79 (86%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 112 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 171
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 153
Query: 172 tttggattgaagggagctc 190
|||||||||||||||||||
Sbjct: 154 tttggattgaagggagctc 172
>51603_ptc-miR159b:pmrd
Length = 187
Score = 83.8 bits (42), Expect = 4e-17
Identities = 66/74 (89%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||| | || ||| |||||||| |||||||||||||||| ||
Sbjct: 13 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 72
Query: 61 accacagccctatc 74
|||||||||||||
Sbjct: 73 cccacagccctatc 86
Score = 65.9 bits (33), Expect = 1e-11
Identities = 59/67 (88%), Gaps = 3/67 (4%)
Strand = Plus / Plus
Query: 124 ggcttgcatatctctggagcttcattaccttattatgttagatccttgtttggattgaag 183
|||||||||||||| ||||||| ||||||| || |||||||| || ||||||||||||
Sbjct: 113 ggcttgcatatctcaggagctttattacctaat---gttagatctttttttggattgaag 169
Query: 184 ggagctc 190
|||||||
Sbjct: 170 ggagctc 176
>51602_ptc-miR159a:pmrd
Length = 183
Score = 83.8 bits (42), Expect = 4e-17
Identities = 67/74 (90%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||||||||| |||||| ||||||||| ||||||| ||||||||||
Sbjct: 13 gagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggat 72
Query: 61 accacagccctatc 74
|||||| ||||||
Sbjct: 73 -ccacagtcctatc 85
Score = 65.9 bits (33), Expect = 1e-11
Identities = 68/79 (86%), Gaps = 3/79 (3%)
Strand = Plus / Plus
Query: 112 ggataggcttgtggcttgcatatctctggagcttcattaccttattatgttagatccttg 171
||||||| ||| |||||||||||||| ||||||| ||| ||| || ||||||||| |
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaat---gttagatccctt 153
Query: 172 tttggattgaagggagctc 190
|||||||||||||||||||
Sbjct: 154 tttggattgaagggagctc 172
>54378_pvu-miR159:pmrd
Length = 174
Score = 77.8 bits (39), Expect = 3e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| ||||||||| ||||||||| | |||| |||||||||||| ||||||||||
Sbjct: 4 gagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggat 63
Query: 61 accacag 67
||||||
Sbjct: 64 cccacag 70
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 165 atccttgtttggattgaagggagctc 190
|||||| |||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctc 171
>54377_pvu-miR159:pmrd
Length = 174
Score = 77.8 bits (39), Expect = 3e-15
Identities = 60/67 (89%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| ||||||||| ||||||||| | |||| |||||||||||| ||||||||||
Sbjct: 4 gagctccttgaagtccaattgaggatcttactgggtggattgagctgcttagctatggat 63
Query: 61 accacag 67
||||||
Sbjct: 64 cccacag 70
Score = 44.1 bits (22), Expect = 4e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 165 atccttgtttggattgaagggagctc 190
|||||| |||||||||||||||||||
Sbjct: 146 atccttctttggattgaagggagctc 171
>48539_gma-miR159a:pmrd
Length = 214
Score = 69.9 bits (35), Expect = 7e-13
Identities = 59/67 (88%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| ||||||||| ||||||||| | |||| ||||||||||| ||||||||||
Sbjct: 23 gagctccttgaagtccaattgaggatcttactgggtgaattgagctgcttagctatggat 82
Query: 61 accacag 67
||||||
Sbjct: 83 cccacag 89
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 167 ccttgtttggattgaagggagctc 190
|||| |||||||||||||||||||
Sbjct: 170 ccttctttggattgaagggagctc 193
>54540_sly-miR159:pmrd
Length = 177
Score = 52.0 bits (26), Expect = 2e-07
Identities = 62/74 (83%)
Strand = Plus / Plus
Query: 1 gagctccttaaagtccaatagaggatcttgcagggtagattgagctgctgagctatggat 60
||||||||| |||||||| | | |||| |||| || ||||||||||||| ||||||||
Sbjct: 3 gagctccttgaagtccaacaaaaaatctaacaggttaaattgagctgctgacctatggat 62
Query: 61 accacagccctatc 74
|| ||||||||||
Sbjct: 63 tcctcagccctatc 76
Score = 40.1 bits (20), Expect = 6e-04
Identities = 29/32 (90%)
Strand = Plus / Plus
Query: 159 tgttagatccttgtttggattgaagggagctc 190
|||| |||| || |||||||||||||||||||
Sbjct: 144 tgtttgatcattttttggattgaagggagctc 175
>54931_zma-miR159b:pmrd
Length = 221
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 170 tgtttggattgaagggagctc 190
|||||||||||||||||||||
Sbjct: 180 tgtttggattgaagggagctc 200
>54673_tae-miR159a:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 170 tgtttggattgaagggagctc 190
|||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctc 172
>48657_hvv-miR159b:pmrd
Length = 174
Score = 42.1 bits (21), Expect = 2e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 170 tgtttggattgaagggagctc 190
|||||||||||||||||||||
Sbjct: 152 tgtttggattgaagggagctc 172
>51338_pgl-miR159:pmrd
Length = 226
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 113 gataggcttgtggcttgcat 132
||||||||||||||||||||
Sbjct: 150 gataggcttgtggcttgcat 169
>46933_ath-miR159c:pmrd
Length = 225
Score = 40.1 bits (20), Expect = 6e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 171 gtttggattgaagggagctc 190
||||||||||||||||||||
Sbjct: 194 gtttggattgaagggagctc 213
