miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 234 bits (118), Expect = 2e-61
Identities = 118/118 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggctaaacacgat 78
Query: 61 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 79 tggctgtgaggcaaattataaaaagaaagagaattggatcccgccttgcatcaactga 136
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 101 bits (51), Expect = 2e-21
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattcggcgatttgattgccagatggct 69
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 gaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||
Sbjct: 133 gaattggatcccgccttgcatcaactga 160
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 60.0 bits (30), Expect = 7e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 85 gaaagagaattggatcccgccttgcatcaactga 118
||||| ||||||||||||||||||||||||||||
Sbjct: 104 gaaagtgaattggatcccgccttgcatcaactga 137
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 gaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||
Sbjct: 30 gaattggatcccgccttgcatcaactga 57
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 gaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||
Sbjct: 91 gaattggatcccgccttgcatcaactga 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaact 23
|||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattc 28
||||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgattc 46
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 91 gaattggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||||
Sbjct: 75 gaattggatcccgccttgcatcaactga 102
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 54.0 bits (27), Expect = 4e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 agagaattggatcccgccttgcatcaactga 118
|||| ||||||||||||||||||||||||||
Sbjct: 86 agaggattggatcccgccttgcatcaactga 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 96 ggatcccgccttgcatcaactga 118
|||||||||||||||||||||||
Sbjct: 95 ggatcccgccttgcatcaactga 117
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 54.0 bits (27), Expect = 4e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgatt 27
|||||||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaactgatt 45
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 gatcccgccttgcatcaactga 118
||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactga 90
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||
Sbjct: 93 attggatcccgccttgcatcaactga 118
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaact 23
|||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaact 41
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||
Sbjct: 94 attggatcccgccttgcatcaactga 119
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaactga 118
||||||||||||||||||||||||||
Sbjct: 97 attggatcccgccttgcatcaactga 122
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaactgattcggc 31
|||||||||||||||||||||| |||||||
Sbjct: 19 tcgcttggtgcaggtcgggaaccaattcggc 49
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaactga 118
||||| ||||||||||||||||||||
Sbjct: 90 attggctcccgccttgcatcaactga 115
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
subsp. pekinensis
Length = 137
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 93 attggatcccgccttgcatcaa 114
||||||||||||||||||||||
Sbjct: 91 attggatcccgccttgcatcaa 112
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tcgcttggtgcaggtcgggaac 22
||||||||||||||||||||||
Sbjct: 19 tcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 97 gatcccgccttgcatcaactga 118
||||||||||||||||||||||
Sbjct: 107 gatcccgccttgcatcaactga 128
