miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>45043_miR399:micropc
Length = 87
Score = 172 bits (87), Expect = 3e-44
Identities = 87/87 (100%)
Strand = Plus / Plus
Query: 1 aggactactttctattggcatatttatttaaaatatgtaatccatgattattagtcttat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 aggactactttctattggcatatttatttaaaatatgtaatccatgattattagtcttat 60
Query: 61 tatgatatgccaaaggagagttgccct 87
|||||||||||||||||||||||||||
Sbjct: 61 tatgatatgccaaaggagagttgccct 87
>46805_miR399:micropc
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccct 73
>46680_miR399:micropc
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 77 tgccaaaggagagttgccct 96
>46622_miR399:micropc
Length = 72
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 53 tgccaaaggagagttgccct 72
>46506_miR399:micropc
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 88 tgccaaaggagagttgccct 107
>46480_miR399:micropc
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 83 tgccaaaggagagttgccct 102
>46373_miR399:micropc
Length = 74
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 54 tgccaaaggagagttgccct 73
>45985_miR399:micropc
Length = 96
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 77 tgccaaaggagagttgccct 96
>45691_miR399:micropc
Length = 71
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 52 tgccaaaggagagttgccct 71
>45227_miR399:micropc
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 53 tgccaaaggagagttgccct 72
>45222_miR399:micropc
Length = 102
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 83 tgccaaaggagagttgccct 102
>44965_miR399:micropc
Length = 108
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 88 tgccaaaggagagttgccct 107
>44886_miR399:micropc
Length = 73
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccct 87
||||||||||||||||||||
Sbjct: 53 tgccaaaggagagttgccct 72
>46147_miR399:micropc
Length = 70
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccc 86
|||||||||||||||||||
Sbjct: 52 tgccaaaggagagttgccc 70
>46085_miR399:micropc
Length = 104
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccc 86
|||||||||||||||||||
Sbjct: 86 tgccaaaggagagttgccc 104
>46063_miR399:micropc
Length = 100
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccc 86
|||||||||||||||||||
Sbjct: 82 tgccaaaggagagttgccc 100
>46005_miR399:micropc
Length = 69
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccc 86
|||||||||||||||||||
Sbjct: 51 tgccaaaggagagttgccc 69
>45316_miR399:micropc
Length = 66
Score = 38.2 bits (19), Expect = 0.001
Identities = 22/23 (95%)
Strand = Plus / Plus
Query: 62 atgatatgccaaaggagagttgc 84
|||| ||||||||||||||||||
Sbjct: 44 atgaaatgccaaaggagagttgc 66
>45225_miR399:micropc
Length = 104
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccc 86
|||||||||||||||||||
Sbjct: 86 tgccaaaggagagttgccc 104
>44788_miR399:micropc
Length = 94
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 68 tgccaaaggagagttgccc 86
|||||||||||||||||||
Sbjct: 76 tgccaaaggagagttgccc 94
