miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST 


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00075;mir-166;AASG02003407.1/927-777 3988:Ricinus communis
           (castor bean)
          Length = 151

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 65  tctcctcggaccaggcttcattcc 88
           ||||||||||||||||||||||||
Sbjct: 121 tctcctcggaccaggcttcattcc 144





>RF00075;mir-166;EU945393.1/89-202 4577:Zea mays
          Length = 114

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ggaatgttgtctggttcaaggtc 23
          |||||||||||||||||||||||
Sbjct: 8  ggaatgttgtctggttcaaggtc 30





>RF00075;mir-166;AY501432.1/1-122 4577:Zea mays
          Length = 122

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ggaatgttgtctggttcaaggtc 23
          |||||||||||||||||||||||
Sbjct: 6  ggaatgttgtctggttcaaggtc 28





>RF00075;mir-166;ABXC01000193.1/181030-180913 4558:Sorghum bicolor
          (sorghum)
          Length = 118

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ggaatgttgtctggttcaaggtc 23
          |||||||||||||||||||||||
Sbjct: 8  ggaatgttgtctggttcaaggtc 30





>RF00075;mir-166;AAAA02030332.1/11899-12019 39946:Oryza sativa
          Indica Group
          Length = 121

 Score = 46.1 bits (23), Expect = 7e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 1  ggaatgttgtctggttcaaggtc 23
          |||||||||||||||||||||||
Sbjct: 8  ggaatgttgtctggttcaaggtc 30





>RF00075;mir-166;AARH01006305.1/50528-50441 3694:Populus
          trichocarpa
          Length = 88

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 67 tcctcggaccaggcttcattcc 88
          ||||||||||||||||||||||
Sbjct: 60 tcctcggaccaggcttcattcc 81





>RF00075;mir-166;AC209184.1/141607-141700 3694:Populus trichocarpa
          Length = 94

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 67 tcctcggaccaggcttcattcc 88
          ||||||||||||||||||||||
Sbjct: 66 tcctcggaccaggcttcattcc 87





>RF00075;mir-166;BABK01014008.1/1327-1223 34305:Lotus japonicus
          Length = 105

 Score = 44.1 bits (22), Expect = 3e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 67 tcctcggaccaggcttcattcc 88
          ||||||||||||||||||||||
Sbjct: 77 tcctcggaccaggcttcattcc 98