miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48963_osa-miR398b:pmrd
Length = 88
Score = 135 bits (68), Expect = 4e-33
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 caggggcgagctgggaacacacggtgatgaggcggtctggtctttcgtgtgttctcaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 caggggcgagctgggaacacacggtgatgaggcggtctggtctttcgtgtgttctcaggt 70
Query: 61 cgcccctg 68
||||||||
Sbjct: 71 cgcccctg 78
>54876_vvi-miR398c:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctg 78
>54875_vvi-miR398b:pmrd
Length = 88
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctg 78
>51746_ptc-miR398c:pmrd
Length = 97
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 68 tgtgttctcaggtcgcccctg 88
>51745_ptc-miR398b:pmrd
Length = 85
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 56 tgtgttctcaggtcgcccctg 76
>48749_mtr-miR398a:pmrd
Length = 77
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 57 tgtgttctcaggtcgcccctg 77
>46890_aqc-miR398b:pmrd
Length = 93
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 72 tgtgttctcaggtcgcccctg 92
>55090_zma-miR398c:pmrd
Length = 108
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccc 66
|||||||||||||||||||
Sbjct: 88 tgtgttctcaggtcgcccc 106
>55089_zma-miR398b:pmrd
Length = 142
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccc 66
|||||||||||||||||||
Sbjct: 121 tgtgttctcaggtcgcccc 139
>55088_zma-miR398a:pmrd
Length = 142
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Minus
Query: 48 tgtgttctcaggtcgcccc 66
|||||||||||||||||||
Sbjct: 22 tgtgttctcaggtcgcccc 4
>54744_tae-miR2025:pmrd
Length = 96
Score = 38.2 bits (19), Expect = 7e-04
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccc 66
|||||||||||||||||||
Sbjct: 71 tgtgttctcaggtcgcccc 89
