miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
Group
Length = 88
Score = 135 bits (68), Expect = 7e-32
Identities = 68/68 (100%)
Strand = Plus / Plus
Query: 1 caggggcgagctgggaacacacggtgatgaggcggtctggtctttcgtgtgttctcaggt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 caggggcgagctgggaacacacggtgatgaggcggtctggtctttcgtgtgttctcaggt 70
Query: 61 cgcccctg 68
||||||||
Sbjct: 71 cgcccctg 78
>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
Length = 128
Score = 50.1 bits (25), Expect = 3e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 44 ttcgtgtgttctcaggtcgcccctg 68
|||||||||||||||||||||||||
Sbjct: 94 ttcgtgtgttctcaggtcgcccctg 118
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 48.1 bits (24), Expect = 1e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 41 tctttcgtgtgttctcaggtcgcccctg 68
|||||| |||||||||||||||||||||
Sbjct: 101 tctttcatgtgttctcaggtcgcccctg 128
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 51 tgtgttctcaggtcgcccctg 71
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 56 tgtgttctcaggtcgcccctg 76
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 67 tgtgttctcaggtcgcccctg 87
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 42.1 bits (21), Expect = 8e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 48 tgtgttctcaggtcgcccctg 68
|||||||||||||||||||||
Sbjct: 60 tgtgttctcaggtcgcccctg 80
