miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00690;MIR408;AARH01001232.1/22611-22493 3694:Populus trichocarpa
Length = 119
Score = 157 bits (79), Expect = 3e-38
Identities = 82/83 (98%)
Strand = Plus / Plus
Query: 1 gacggggaacaggcagagcatggatggagctactaacagaagtacatgttttggctctac 60
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 18 gacggggaacaggcagagcatggatggagctactaacagaagtacttgttttggctctac 77
Query: 61 ccatgcactgcctcttccctggc 83
|||||||||||||||||||||||
Sbjct: 78 ccatgcactgcctcttccctggc 100
>RF00690;MIR408;AASG02001473.1/22877-22996 3988:Ricinus communis
(castor bean)
Length = 120
Score = 91.7 bits (46), Expect = 1e-18
Identities = 74/81 (91%), Gaps = 3/81 (3%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagctactaacagaagtaca--tgttttggctctaccc 62
|||||||||||| |||||||||| ||||||||||||| ||| ||||||||||||||||
Sbjct: 22 gggaacaggcagtgcatggatggggctactaacagaa-aacatctgttttggctctaccc 80
Query: 63 atgcactgcctcttccctggc 83
||||||||||||||||||||
Sbjct: 81 ctgcactgcctcttccctggc 101
>RF00690;MIR408;AM434998.2/53932-53808 29760:Vitis vinifera
Length = 125
Score = 65.9 bits (33), Expect = 7e-11
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||||| ||||||||||||||||||||||||||||||
Sbjct: 71 tgtttttgctctacccatgcactgcctcttccctggc 107
>RF00690;MIR408;AF419552.1/68-193 3702:Arabidopsis thaliana (thale
cress)
Length = 126
Score = 61.9 bits (31), Expect = 1e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 49 ttttggctctacccatgcactgcctcttccctggc 83
||||| |||||||||||||||||||||||||||||
Sbjct: 73 ttttgtctctacccatgcactgcctcttccctggc 107
>RF00690;MIR408;BABK01104206.1/188-52 34305:Lotus japonicus
Length = 137
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||| ||||||||| ||||||||||||||||||||||
Sbjct: 82 tgttgtggctctactcatgcactgcctcttccctggc 118
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 5 gggaacaggcagagcatggatggagcta 32
||||| ||||||||||||||||||||||
Sbjct: 23 gggaagaggcagagcatggatggagcta 50
>RF00690;MIR408;ABIM01026620.1/11572-11449 3649:Carica papaya
(papaya)
Length = 124
Score = 54.0 bits (27), Expect = 3e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 49 ttttggctctacccatgcactgcctcttccctggc 83
|||||| ||||||| ||||||||||||||||||||
Sbjct: 71 ttttggttctacccctgcactgcctcttccctggc 105
>RF00690;MIR408;AC136840.24/84429-84307 3880:Medicago truncatula
(barrel medic)
Length = 123
Score = 50.1 bits (25), Expect = 4e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 47 tgttttggctctacccatgcactgcctcttccctggc 83
|||| |||||| || ||||||||||||||||||||||
Sbjct: 68 tgttgtggctccactcatgcactgcctcttccctggc 104
>RF00690;MIR408;AC235367.1/71602-71757 3847:Glycine max (soybean)
Length = 156
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 catgcactgcctcttccctggc 83
||||||||||||||||||||||
Sbjct: 117 catgcactgcctcttccctggc 138
