miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46823_miR171:micropc
Length = 91
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 61
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 62 gatctcagattgagccgcgccaatatcac 90
>46256_miR171:micropc
Length = 89
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 61 gatctcagattgagccgcgccaatatcac 89
>44930_miR171:micropc
Length = 86
Score = 170 bits (86), Expect = 1e-43
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 3 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 63 tctcagattgagccgcgccaatatca 88
||||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatca 86
>46236_miR171:micropc
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 3 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 63 tctcagattgagccgcgccaatatc 87
|||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85
>45865_miR171:micropc
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 3 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 63 tctcagattgagccgcgccaatatc 87
|||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85
>45007_miR171:micropc
Length = 85
Score = 168 bits (85), Expect = 4e-43
Identities = 85/85 (100%)
Strand = Plus / Plus
Query: 3 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60
Query: 63 tctcagattgagccgcgccaatatc 87
|||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85
>46075_miR171:micropc
Length = 83
Score = 165 bits (83), Expect = 7e-42
Identities = 83/83 (100%)
Strand = Plus / Plus
Query: 4 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60
Query: 64 ctcagattgagccgcgccaatat 86
|||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatat 83
>45507_miR171:micropc
Length = 88
Score = 93.7 bits (47), Expect = 2e-20
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
|||||||||||||||||||||||||||||| |||||| ||| || ||||||| ||
Sbjct: 2 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 58
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 59 gatctcagattgagccgcgccaatatcac 87
>45439_miR171:micropc
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
|||||||||||||||||||||||||||||| |||||| ||| || ||||||| ||
Sbjct: 1 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 57
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 58 gatctcagattgagccgcgccaatatcac 86
>45180_miR171:micropc
Length = 86
Score = 93.7 bits (47), Expect = 2e-20
Identities = 79/89 (88%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
|||||||||||||||||||||||||||||| |||||| ||| || ||||||| ||
Sbjct: 1 gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 57
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 58 gatctcagattgagccgcgccaatatcac 86
>46191_miR171:micropc
Length = 83
Score = 87.7 bits (44), Expect = 1e-18
Identities = 76/86 (88%), Gaps = 3/86 (3%)
Strand = Plus / Plus
Query: 3 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
|||||||||||||||||||||||||||| |||||| ||| || ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 57
Query: 63 tctcagattgagccgcgccaatatca 88
||||||||||||||||||||||||||
Sbjct: 58 tctcagattgagccgcgccaatatca 83
>45723_miR171:micropc
Length = 82
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 3 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
|||||||||||||||||||||||||||| |||||| ||| || ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 57
Query: 63 tctcagattgagccgcgccaatatc 87
|||||||||||||||||||||||||
Sbjct: 58 tctcagattgagccgcgccaatatc 82
>45597_miR171:micropc
Length = 82
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 3 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
|||||||||||||||||||||||||||| |||||| ||| || ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 57
Query: 63 tctcagattgagccgcgccaatatc 87
|||||||||||||||||||||||||
Sbjct: 58 tctcagattgagccgcgccaatatc 82
>45121_miR171:micropc
Length = 82
Score = 85.7 bits (43), Expect = 5e-18
Identities = 75/85 (88%), Gaps = 3/85 (3%)
Strand = Plus / Plus
Query: 3 gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
|||||||||||||||||||||||||||| |||||| ||| || ||||||| ||||
Sbjct: 1 gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 57
Query: 63 tctcagattgagccgcgccaatatc 87
|||||||||||||||||||||||||
Sbjct: 58 tctcagattgagccgcgccaatatc 82
>46459_miR171:micropc
Length = 80
Score = 81.8 bits (41), Expect = 8e-17
Identities = 73/83 (87%), Gaps = 3/83 (3%)
Strand = Plus / Plus
Query: 4 atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 63
||||||||||||||||||||||||||| |||||| ||| || ||||||| |||||
Sbjct: 1 atgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacgat 57
Query: 64 ctcagattgagccgcgccaatat 86
|||||||||||||||||||||||
Sbjct: 58 ctcagattgagccgcgccaatat 80
