miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>46823_miR171:micropc
          Length = 91

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2  gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 61

                                       
Query: 61 gatctcagattgagccgcgccaatatcac 89
          |||||||||||||||||||||||||||||
Sbjct: 62 gatctcagattgagccgcgccaatatcac 90




>46256_miR171:micropc
          Length = 89

 Score =  176 bits (89), Expect = 2e-45
 Identities = 89/89 (100%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60

                                       
Query: 61 gatctcagattgagccgcgccaatatcac 89
          |||||||||||||||||||||||||||||
Sbjct: 61 gatctcagattgagccgcgccaatatcac 89




>44930_miR171:micropc
          Length = 86

 Score =  170 bits (86), Expect = 1e-43
 Identities = 86/86 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60

                                    
Query: 63 tctcagattgagccgcgccaatatca 88
          ||||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatca 86




>46236_miR171:micropc
          Length = 85

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60

                                   
Query: 63 tctcagattgagccgcgccaatatc 87
          |||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85




>45865_miR171:micropc
          Length = 85

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60

                                   
Query: 63 tctcagattgagccgcgccaatatc 87
          |||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85




>45007_miR171:micropc
          Length = 85

 Score =  168 bits (85), Expect = 4e-43
 Identities = 85/85 (100%)
 Strand = Plus / Plus

                                                                      
Query: 3  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 60

                                   
Query: 63 tctcagattgagccgcgccaatatc 87
          |||||||||||||||||||||||||
Sbjct: 61 tctcagattgagccgcgccaatatc 85




>46075_miR171:micropc
          Length = 83

 Score =  165 bits (83), Expect = 7e-42
 Identities = 83/83 (100%)
 Strand = Plus / Plus

                                                                      
Query: 4  atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 63
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 60

                                 
Query: 64 ctcagattgagccgcgccaatat 86
          |||||||||||||||||||||||
Sbjct: 61 ctcagattgagccgcgccaatat 83




>45507_miR171:micropc
          Length = 88

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 79/89 (88%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
          ||||||||||||||||||||||||||||||  ||||||  ||| ||   |||||||  ||
Sbjct: 2  gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 58

                                       
Query: 61 gatctcagattgagccgcgccaatatcac 89
          |||||||||||||||||||||||||||||
Sbjct: 59 gatctcagattgagccgcgccaatatcac 87




>45439_miR171:micropc
          Length = 86

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 79/89 (88%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
          ||||||||||||||||||||||||||||||  ||||||  ||| ||   |||||||  ||
Sbjct: 1  gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 57

                                       
Query: 61 gatctcagattgagccgcgccaatatcac 89
          |||||||||||||||||||||||||||||
Sbjct: 58 gatctcagattgagccgcgccaatatcac 86




>45180_miR171:micropc
          Length = 86

 Score = 93.7 bits (47), Expect = 2e-20
 Identities = 79/89 (88%), Gaps = 3/89 (3%)
 Strand = Plus / Plus

                                                                      
Query: 1  gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
          ||||||||||||||||||||||||||||||  ||||||  ||| ||   |||||||  ||
Sbjct: 1  gcgatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaac 57

                                       
Query: 61 gatctcagattgagccgcgccaatatcac 89
          |||||||||||||||||||||||||||||
Sbjct: 58 gatctcagattgagccgcgccaatatcac 86




>46191_miR171:micropc
          Length = 83

 Score = 87.7 bits (44), Expect = 1e-18
 Identities = 76/86 (88%), Gaps = 3/86 (3%)
 Strand = Plus / Plus

                                                                      
Query: 3  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
          ||||||||||||||||||||||||||||  ||||||  ||| ||   |||||||  ||||
Sbjct: 1  gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 57

                                    
Query: 63 tctcagattgagccgcgccaatatca 88
          ||||||||||||||||||||||||||
Sbjct: 58 tctcagattgagccgcgccaatatca 83




>45723_miR171:micropc
          Length = 82

 Score = 85.7 bits (43), Expect = 5e-18
 Identities = 75/85 (88%), Gaps = 3/85 (3%)
 Strand = Plus / Plus

                                                                      
Query: 3  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
          ||||||||||||||||||||||||||||  ||||||  ||| ||   |||||||  ||||
Sbjct: 1  gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 57

                                   
Query: 63 tctcagattgagccgcgccaatatc 87
          |||||||||||||||||||||||||
Sbjct: 58 tctcagattgagccgcgccaatatc 82




>45597_miR171:micropc
          Length = 82

 Score = 85.7 bits (43), Expect = 5e-18
 Identities = 75/85 (88%), Gaps = 3/85 (3%)
 Strand = Plus / Plus

                                                                      
Query: 3  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
          ||||||||||||||||||||||||||||  ||||||  ||| ||   |||||||  ||||
Sbjct: 1  gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 57

                                   
Query: 63 tctcagattgagccgcgccaatatc 87
          |||||||||||||||||||||||||
Sbjct: 58 tctcagattgagccgcgccaatatc 82




>45121_miR171:micropc
          Length = 82

 Score = 85.7 bits (43), Expect = 5e-18
 Identities = 75/85 (88%), Gaps = 3/85 (3%)
 Strand = Plus / Plus

                                                                      
Query: 3  gatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacga 62
          ||||||||||||||||||||||||||||  ||||||  ||| ||   |||||||  ||||
Sbjct: 1  gatgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacga 57

                                   
Query: 63 tctcagattgagccgcgccaatatc 87
          |||||||||||||||||||||||||
Sbjct: 58 tctcagattgagccgcgccaatatc 82




>46459_miR171:micropc
          Length = 80

 Score = 81.8 bits (41), Expect = 8e-17
 Identities = 73/83 (87%), Gaps = 3/83 (3%)
 Strand = Plus / Plus

                                                                      
Query: 4  atgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatacgat 63
          |||||||||||||||||||||||||||  ||||||  ||| ||   |||||||  |||||
Sbjct: 1  atgttggtgaggttcaatccgaagacgagtttacgttttgttt---tcgtaaagaacgat 57

                                 
Query: 64 ctcagattgagccgcgccaatat 86
          |||||||||||||||||||||||
Sbjct: 58 ctcagattgagccgcgccaatat 80