miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;AC152351.7/84740-84636 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 82/89 (92%), Gaps = 2/89 (2%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
||||||||||||||||||||||||||||||||||||| || || ||| |||||||||
Sbjct: 9 gcgatgttggtgaggttcaatccgaagacggatttac--atgtatagagttgtaaaatac 66
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 67 gatctcagattgagccgcgccaatatcac 95
>RF00643;MIR171_1;AASG02008156.1/3849-3747 3988:Ricinus communis
(castor bean)
Length = 103
Score = 95.6 bits (48), Expect = 9e-20
Identities = 79/89 (88%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
||||||||||||||||||||||||||||||||||||| |||| || ||||| ||
Sbjct: 9 gcgatgttggtgaggttcaatccgaagacggatttac----acattctgttgtaaaggac 64
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 65 gatctcagattgagccgcgccaatatcac 93
>RF00643;MIR171_1;CAAP02000222.1/31256-31356 29760:Vitis vinifera
Length = 101
Score = 91.7 bits (46), Expect = 1e-18
Identities = 78/89 (87%), Gaps = 6/89 (6%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
|||||||||||||||||||||||||||||||||||||||| || |||||| ||
Sbjct: 9 gcgatgttggtgaggttcaatccgaagacggatttacgaa------gagccgtaaagaac 62
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||| ||||||||||||||||||||||
Sbjct: 63 gatctctgattgagccgcgccaatatcac 91
>RF00643;MIR171_1;AC209588.1/19088-18986 4081:Solanum lycopersicum
Length = 103
Score = 77.8 bits (39), Expect = 2e-14
Identities = 78/89 (87%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
|||||||||||||||||||||||||||||| ||||| | | ||| ||||||| ||
Sbjct: 9 gcgatgttggtgaggttcaatccgaagacgaatttatg--cttatt--ttcgtaaagaac 64
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 65 gatctcagattgagccgcgccaatatcac 93
>RF00643;MIR171_1;AY728474.1/2-89 3694:Populus trichocarpa
Length = 88
Score = 69.9 bits (35), Expect = 5e-12
Identities = 77/89 (86%), Gaps = 4/89 (4%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttacgaattgattcagtcgtaaaatac 60
||||||||||||||||||||||||||||| ||||||| || | | ||||||| |
Sbjct: 2 gcgatgttggtgaggttcaatccgaagacagatttacac---gagtgaaa-gtaaaatcc 57
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 58 gatctcagattgagccgcgccaatatcac 86
>RF00643;MIR171_1;ABIM01011221.1/13564-13667 3649:Carica papaya
(papaya)
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 1 gcgatgttggtgaggttcaatccgaagacggatttac 37
|||||||||||||||||||||| |||||| |||||||
Sbjct: 9 gcgatgttggtgaggttcaatctgaagacagatttac 45
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 cgatctcagattgagccgcgccaatatcac 89
|||||||||| |||||||||||||||||||
Sbjct: 65 cgatctcagaatgagccgcgccaatatcac 94
>RF00643;MIR171_1;AM437215.2/7577-7677 29760:Vitis vinifera
Length = 101
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 61 gatctcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||||||
Sbjct: 63 gatctcagattgagccgcgccaatatcac 91
>RF00643;MIR171_1;ABEU01001861.1/185639-185542
145481:Physcomitrella patens subsp. patens
Length = 98
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 64 ctcagattgagccgcgccaatatcac 89
||||||||||||||||||||||||||
Sbjct: 63 ctcagattgagccgcgccaatatcac 88
>RF00643;MIR171_1;ABEU01005399.1/9805-9901 145481:Physcomitrella
patens subsp. patens
Length = 97
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 65 tcagattgagccgcgccaatatcac 89
|||||||||||||||||||||||||
Sbjct: 63 tcagattgagccgcgccaatatcac 87
>RF00643;MIR171_1;AP010316.1/5761-5862 34305:Lotus japonicus
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 71 gattgagccgcgccaatatcac 92
>RF00643;MIR171_1;AC212766.1/32177-32277 4081:Solanum lycopersicum
Length = 101
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 70 gattgagccgcgccaatatcac 91
>RF00643;MIR171_1;ABXC01002454.1/83659-83541 4558:Sorghum bicolor
(sorghum)
Length = 119
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 68 gattgagccgcgccaatatcac 89
||||||||||||||||||||||
Sbjct: 88 gattgagccgcgccaatatcac 109
