miRNEST 2.0, an integrative microRNA resource :: BLAST
>51712_ptc-miR319f:pmrd
Length = 202
Score = 89.7 bits (45), Expect = 6e-19
Identities = 154/183 (84%), Gaps = 13/183 (7%)
Strand = Plus / Plus
Query: 1 gagagcttccttca-cccactcatgga--ggagaactggggttgaattagctgccgcctc 57
|||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |||
Sbjct: 12 gagagcttccttcagcccactcatggataggagaaa-ggggttgaattagctgccgactc 70
Query: 58 attcatccaaccactcagtagaaa----ggaataggttttgt---gctactgtgattgag 110
|||||| ||| ||| ||||||||| ||||| | | || | ||||||||||||| |
Sbjct: 71 attcattcaagcac-cagtagaaaaaggggaatggatattcttttgctactgtgattgtg 129
Query: 111 tgaatgatgcgggagatagttttctat-tcctctctttccttgcttggactgaagggagc 169
|||||||||||||||||| |||| || ||||| |||| |||||||||||||||||||
Sbjct: 130 tgaatgatgcgggagataattttacatcccctctttttctgtgcttggactgaagggagc 189
Query: 170 tcc 172
|||
Sbjct: 190 tcc 192
>51351_ppl-miR319:pmrd
Length = 204
Score = 85.7 bits (43), Expect = 1e-17
Identities = 71/79 (89%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 95 tgctactgtgattgagtgaatgatgcgggagatagttttctat-tcctctctttccttgc 153
|||||||||||||| |||||||||||||||||||||||| || ||||| |||| |||
Sbjct: 114 tgctactgtgattgtgtgaatgatgcgggagatagttttacatcccctctttttctgtgc 173
Query: 154 ttggactgaagggagctcc 172
|||||||||||||||||||
Sbjct: 174 ttggactgaagggagctcc 192
>51713_ptc-miR319g:pmrd
Length = 204
Score = 81.8 bits (41), Expect = 2e-16
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 95 tgctactgtgattgagtgaatgatgcgggagatagttttctattcctctc--tttccttg 152
|||||||||||||| ||||||||||||||||||| ||||| | ||||||| |||| ||
Sbjct: 116 tgctactgtgattgtgtgaatgatgcgggagataattttcca-tcctctccttttctgtg 174
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 175 cttggactgaagggagctcc 194
>54844_vvi-miR319c:pmrd
Length = 182
Score = 50.1 bits (25), Expect = 6e-07
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 39 ttgaattagctgccgcctcattcatccaa 67
||||||||||||||| |||||||||||||
Sbjct: 49 ttgaattagctgccgactcattcatccaa 77
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 148 tgcttggactgaagggagctcc 169
>51709_ptc-miR319c:pmrd
Length = 196
Score = 46.1 bits (23), Expect = 9e-06
Identities = 67/79 (84%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 95 tgctactgtgattgagtgaatgatgcgggagatagttttctattcctctctt-tccttgc 153
||||| ||||| || ||||||||||||||||||| |||| || | | |||| || |||
Sbjct: 109 tgctattgtgaatgtgtgaatgatgcgggagataaatttc-atccttttcttctctgtgc 167
Query: 154 ttggactgaagggagctcc 172
|||||||||||||||||||
Sbjct: 168 ttggactgaagggagctcc 186
>54846_vvi-miR319f:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 159 tgcttggactgaagggagctcc 180
Score = 42.1 bits (21), Expect = 1e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 97 ctactgtgattgagtgaatgatgcgggag 125
||||||||| || ||||||||||||||||
Sbjct: 105 ctactgtgaatgtgtgaatgatgcgggag 133
>54686_tae-miR319a:pmrd
Length = 196
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 174 tgcttggactgaagggagctcc 195
>51710_ptc-miR319d:pmrd
Length = 193
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 162 tgcttggactgaagggagctcc 183
>51707_ptc-miR319a:pmrd
Length = 188
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aattagctgccgcctcattcatccaa 67
|||||||||||| |||||||||||||
Sbjct: 52 aattagctgccgactcattcatccaa 77
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 tgagtgaatgatgcgggaga 126
||||||||||||||||||||
Sbjct: 114 tgagtgaatgatgcgggaga 133
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 159 cttggactgaagggagctcc 178
>48573_gma-miR319b:pmrd
Length = 208
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aattagctgccgcctcattcatccaa 67
|||||||||||| |||||||||||||
Sbjct: 63 aattagctgccgactcattcatccaa 88
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 tgagtgaatgatgcgggaga 126
||||||||||||||||||||
Sbjct: 124 tgagtgaatgatgcgggaga 143
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 169 cttggactgaagggagctcc 188
>48572_gma-miR319a:pmrd
Length = 207
Score = 44.1 bits (22), Expect = 3e-05
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aattagctgccgcctcattcatccaa 67
|||||||||||| |||||||||||||
Sbjct: 62 aattagctgccgactcattcatccaa 87
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 107 tgagtgaatgatgcgggaga 126
||||||||||||||||||||
Sbjct: 123 tgagtgaatgatgcgggaga 142
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 168 cttggactgaagggagctcc 187
>46993_ath-miR319b:pmrd
Length = 172
Score = 44.1 bits (22), Expect = 3e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 149 tgcttggactgaagggagctcc 170
>54380_pvu-miR319c:pmrd
Length = 734
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 152 gcttggactgaagggagctcc 172
|||||||||||||||||||||
Sbjct: 408 gcttggactgaagggagctcc 428
>52451_ptc-miRf10629-akr:pmrd
Length = 170
Score = 42.1 bits (21), Expect = 1e-04
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctc 171
|||||||||||||||||||||
Sbjct: 150 tgcttggactgaagggagctc 170
>54843_vvi-miR319b:pmrd
Length = 194
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 162 cttggactgaagggagctcc 181
>54583_smo-miR319:pmrd
Length = 215
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 185 cttggactgaagggagctcc 204
>51390_ppt-miR319e:pmrd
Length = 174
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>51389_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51388_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51387_ppt-miR319d:pmrd
Length = 170
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 145 cttggactgaagggagctcc 164
>51386_ppt-miR319c:pmrd
Length = 189
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
>51385_ppt-miR319b:pmrd
Length = 160
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 140 cttggactgaagggagctcc 159
>51384_ppt-miR319a:pmrd
Length = 169
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 148 cttggactgaagggagctcc 167
>48687_ltu-miR319:pmrd
Length = 167
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 147 cttggactgaagggagctcc 166
>46994_ath-miR319c:pmrd
Length = 199
Score = 40.1 bits (20), Expect = 5e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 110 gtgaatgatgcgggagatagtttt 133
||||||||||||||||||| ||||
Sbjct: 127 gtgaatgatgcgggagatattttt 150
>46884_aqc-miR319:pmrd
Length = 177
Score = 40.1 bits (20), Expect = 5e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 154 cttggactgaagggagctcc 173
