miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;AARH01005879.1/28103-28306 3694:Populus trichocarpa
Length = 204
Score = 89.7 bits (45), Expect = 1e-17
Identities = 154/183 (84%), Gaps = 13/183 (7%)
Strand = Plus / Plus
Query: 1 gagagcttccttca-cccactcatgga--ggagaactggggttgaattagctgccgcctc 57
|||||||||||||| |||||||||||| |||||| ||||||||||||||||||| |||
Sbjct: 11 gagagcttccttcagcccactcatggataggagaaa-ggggttgaattagctgccgactc 69
Query: 58 attcatccaaccactcagtagaaa----ggaataggttttgt---gctactgtgattgag 110
|||||| ||| ||| ||||||||| ||||| | | || | ||||||||||||| |
Sbjct: 70 attcattcaagcac-cagtagaaaaaggggaatggatattcttttgctactgtgattgtg 128
Query: 111 tgaatgatgcgggagatagttttctat-tcctctctttccttgcttggactgaagggagc 169
|||||||||||||||||| |||| || ||||| |||| |||||||||||||||||||
Sbjct: 129 tgaatgatgcgggagataattttacatcccctctttttctgtgcttggactgaagggagc 188
Query: 170 tcc 172
|||
Sbjct: 189 tcc 191
>RF00638;MIR159;AASG02000468.1/24439-24641 3988:Ricinus communis
(castor bean)
Length = 203
Score = 89.7 bits (45), Expect = 1e-17
Identities = 69/77 (89%)
Strand = Plus / Plus
Query: 96 gctactgtgattgagtgaatgatgcgggagatagttttctattcctctctttccttgctt 155
||||||||||||| |||||||||||||||||| |||| || ||||| ||||| |||||
Sbjct: 114 gctactgtgattgtatgaatgatgcgggagataattttgcatccctctttttccgtgctt 173
Query: 156 ggactgaagggagctcc 172
|||||||||||||||||
Sbjct: 174 ggactgaagggagctcc 190
>RF00638;MIR159;AARH01009765.1/191097-190892 3694:Populus
trichocarpa
Length = 206
Score = 81.8 bits (41), Expect = 3e-15
Identities = 72/80 (90%), Gaps = 3/80 (3%)
Strand = Plus / Plus
Query: 95 tgctactgtgattgagtgaatgatgcgggagatagttttctattcctctc--tttccttg 152
|||||||||||||| ||||||||||||||||||| ||||| | ||||||| |||| ||
Sbjct: 115 tgctactgtgattgtgtgaatgatgcgggagataattttcca-tcctctccttttctgtg 173
Query: 153 cttggactgaagggagctcc 172
||||||||||||||||||||
Sbjct: 174 cttggactgaagggagctcc 193
>RF00638;MIR159;AASG02011104.1/6116-5917 3988:Ricinus communis
(castor bean)
Length = 200
Score = 54.0 bits (27), Expect = 6e-07
Identities = 68/79 (86%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 95 tgctactgtgattgagtgaatgatgcgggagatagttttctattcctctctt-tccttgc 153
||||| ||||| || ||||||||||||||||||| |||| || | |||||| || |||
Sbjct: 110 tgctattgtgaatgtgtgaatgatgcgggagataaatttc-atacttctcttctctgtgc 168
Query: 154 ttggactgaagggagctcc 172
|||||||||||||||||||
Sbjct: 169 ttggactgaagggagctcc 187
>RF00638;MIR159;ABIM01005798.1/7517-7326 3649:Carica papaya (papaya)
Length = 192
Score = 52.0 bits (26), Expect = 3e-06
Identities = 53/62 (85%)
Strand = Plus / Plus
Query: 111 tgaatgatgcgggagatagttttctattcctctctttccttgcttggactgaagggagct 170
|||||||||||||||||| |||| || | ||| | || ||||||||||||||||||||
Sbjct: 118 tgaatgatgcgggagatatttttacatccatctttctctgtgcttggactgaagggagct 177
Query: 171 cc 172
||
Sbjct: 178 cc 179
>RF00638;MIR159;ABIM01001344.1/11584-11387 3649:Carica papaya
(papaya)
Length = 198
Score = 50.1 bits (25), Expect = 1e-05
Identities = 62/73 (84%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 100 ctgtgattgagtgaatgatgcgggagatagttttctattcctctctttccttgcttggac 159
|||||| || ||||||||||||||||||| ||| | ||| ||| | || |||||||||
Sbjct: 114 ctgtgaatgtgtgaatgatgcgggagataatttcatcttcttct-tgtctgtgcttggac 172
Query: 160 tgaagggagctcc 172
|||||||||||||
Sbjct: 173 tgaagggagctcc 185
>RF00638;MIR159;CU459032.2/137942-137752 3880:Medicago truncatula
(barrel medic)
Length = 191
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 ttgcttggactgaagggagctcc 172
|||||||||||||||||||||||
Sbjct: 156 ttgcttggactgaagggagctcc 178
>RF00638;MIR159;CU570967.5/92301-92498 3880:Medicago truncatula
(barrel medic)
Length = 198
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 150 ttgcttggactgaagggagctcc 172
|||||||||||||||||||||||
Sbjct: 163 ttgcttggactgaagggagctcc 185
>RF00638;MIR159;EU549299.1/339-148 3702:Arabidopsis thaliana (thale
cress)
Length = 192
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 158 tgcttggactgaagggagctcc 179
>RF00638;MIR159;AY728409.1/1-184 3694:Populus trichocarpa
Length = 184
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aattagctgccgcctcattcatccaa 67
|||||||||||| |||||||||||||
Sbjct: 51 aattagctgccgactcattcatccaa 76
>RF00638;MIR159;AY884227.1/8-182 3694:Populus trichocarpa
Length = 175
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 150 tgcttggactgaagggagctcc 171
>RF00638;MIR159;AASG02019405.1/2563-2341 3988:Ricinus communis
(castor bean)
Length = 223
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aattagctgccgcctcattcatccaa 67
|||||||||||| |||||||||||||
Sbjct: 52 aattagctgccgactcattcatccaa 77
>RF00638;MIR159;BABK01011373.1/1521-1344 34305:Lotus japonicus
Length = 178
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 42 aattagctgccgcctcattcatccaa 67
|||||||||||| |||||||||||||
Sbjct: 52 aattagctgccgactcattcatccaa 77
>RF00638;MIR159;AM471650.2/47253-47061 29760:Vitis vinifera
Length = 193
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 159 tgcttggactgaagggagctcc 180
>RF00638;MIR159;AM458581.1/27231-27413 29760:Vitis vinifera
Length = 183
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 151 tgcttggactgaagggagctcc 172
||||||||||||||||||||||
Sbjct: 149 tgcttggactgaagggagctcc 170
