miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48642_han-miR157a:pmrd
Length = 86
Score = 155 bits (78), Expect = 5e-39
Identities = 78/78 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacagagaagcatgaattgcacatagatattgcaattcactccttc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacagagaagcatgaattgcacatagatattgcaattcactccttc 64
Query: 61 gtgctctctatgcttctg 78
||||||||||||||||||
Sbjct: 65 gtgctctctatgcttctg 82
>51599_ptc-miR156i:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 tcactccttcgtgctctctatgcttctg 78
||||||||| ||||||||||||||||||
Sbjct: 61 tcactcctttgtgctctctatgcttctg 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34
>48695_mtr-miR156e:pmrd
Length = 172
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 tcactccttcgtgctctctatgcttctg 78
||||||||| ||||||||||||||||||
Sbjct: 137 tcactcctttgtgctctctatgcttctg 164
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 10 cagaagatagagagcacaga 29
>46862_aqc-miR156b:pmrd
Length = 83
Score = 48.1 bits (24), Expect = 9e-07
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 51 tcactccttcgtgctctctatgcttctg 78
||||||||| ||||||||||||||||||
Sbjct: 51 tcactcctttgtgctctctatgcttctg 78
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacaga 23
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 cactccttcgtgctctctatgcttctg 78
|||||||| ||||||||||||||||||
Sbjct: 54 cactcctttgtgctctctatgcttctg 80
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 7 cagaagatagagagcacaga 26
>51600_ptc-miR156j:pmrd
Length = 100
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 cactccttcgtgctctctatgcttctg 78
|||||||| ||||||||||||||||||
Sbjct: 62 cactcctttgtgctctctatgcttctg 88
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34
>48631_gra-miR157b:pmrd
Length = 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 52 cactccttcgtgctctctatgcttctg 78
|||||||| ||||||||||||||||||
Sbjct: 57 cactcctttgtgctctctatgcttctg 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 9 cagaagatagagagcacaga 28
>54774_vvi-miR156i:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 51 tcactccttcgtgctctctatgcttctg 78
||||||||| ||||||||||| ||||||
Sbjct: 60 tcactcctttgtgctctctattcttctg 87
>54772_vvi-miR156g:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34
>54570_smo-miR156b:pmrd
Length = 112
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34
>51597_ptc-miR156g:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 15 cagaagatagagagcacaga 34
>48790_nta-miR157:pmrd
Length = 131
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 5 cagaagatagagagcacaga 24
>48697_mtr-miR156h:pmrd
Length = 94
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 10 cagaagatagagagcacaga 29
>48630_gra-miR157a:pmrd
Length = 101
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 9 cagaagatagagagcacaga 28
>48531_gma-miR156d:pmrd
Length = 151
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 25 cagaagatagagagcacaga 44
>46925_ath-miR157b:pmrd
Length = 132
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 23 cagaagatagagagcacaga 42
>46924_ath-miR157a:pmrd
Length = 98
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 8 cagaagatagagagcacaga 27
>46861_aqc-miR156a:pmrd
Length = 81
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 cagaagatagagagcacaga 20
||||||||||||||||||||
Sbjct: 4 cagaagatagagagcacaga 23
