miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>44904_miR1862:micropc
Length = 88
Score = 159 bits (80), Expect = 5e-40
Identities = 87/88 (98%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 14 tgtcctaaaatatagcaacctagtatgtccacattcgttatactaggatatgtcccatcc 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgtcctaaaatatagcaacctagtatgtccacattcgttatactaggatatgtcccatcc 60
Query: 74 -agtactaggttgctatattttgggacg 100
|||||||||||||||||||||||||||
Sbjct: 61 aagtactaggttgctatattttgggacg 88
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 76 tactaggttgctatattttgggac 99
||||||||||||||||||| ||||
Sbjct: 25 tactaggttgctatattttaggac 2
Score = 40.1 bits (20), Expect = 3e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 15 gtcctaaaatatagcaacctagta 38
|||| |||||||||||||||||||
Sbjct: 87 gtcccaaaatatagcaacctagta 64
>46836_miR1439:micropc
Length = 86
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 87 tatattttgggacggagggagta 109
|||||||||||||||||||||||
Sbjct: 63 tatattttgggacggagggagta 85
>45184_miR1436:micropc
Length = 68
Score = 46.1 bits (23), Expect = 5e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 78 ctaggttgctatattttgggacggagggagt 108
||||||||||||||| | |||||||||||||
Sbjct: 38 ctaggttgctatattataggacggagggagt 68
>45970_miR1439:micropc
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 89 tattttgggacggagggagtac 110
||||||||||||||||||||||
Sbjct: 22 tattttgggacggagggagtac 1
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tattttgggacggagggagta 109
|||||||||||||||||||||
Sbjct: 78 tattttgggacggagggagta 98
>45205_miR1439:micropc
Length = 99
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 89 tattttgggacggagggagtac 110
||||||||||||||||||||||
Sbjct: 22 tattttgggacggagggagtac 1
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tattttgggacggagggagta 109
|||||||||||||||||||||
Sbjct: 78 tattttgggacggagggagta 98
>46048_miR1439:micropc
Length = 58
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tattttgggacggagggagta 109
|||||||||||||||||||||
Sbjct: 36 tattttgggacggagggagta 56
>45320_miR1439:micropc
Length = 74
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tattttgggacggagggagta 109
|||||||||||||||||||||
Sbjct: 52 tattttgggacggagggagta 72
>45276_miR1439:micropc
Length = 74
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tattttgggacggagggagta 109
|||||||||||||||||||||
Sbjct: 52 tattttgggacggagggagta 72
>45016_miR1439:micropc
Length = 74
Score = 42.1 bits (21), Expect = 8e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 89 tattttgggacggagggagta 109
|||||||||||||||||||||
Sbjct: 52 tattttgggacggagggagta 72
