miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48511_ghr-miR398:pmrd
Length = 67
Score = 133 bits (67), Expect = 2e-32
Identities = 67/67 (100%)
Strand = Plus / Plus
Query: 1 gaggggtgccacctaagaacacaggtcatcccttaaccaaatagcttgtgttctcaggtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 gaggggtgccacctaagaacacaggtcatcccttaaccaaatagcttgtgttctcaggtc 60
Query: 61 acccctt 67
|||||||
Sbjct: 61 acccctt 67
>54874_vvi-miR398a:pmrd
Length = 103
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ttgtgttctcaggtcacccctt 67
||||||||||||||||||||||
Sbjct: 72 ttgtgttctcaggtcacccctt 93
>48582_gma-miR398b:pmrd
Length = 135
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ttgtgttctcaggtcacccctt 67
||||||||||||||||||||||
Sbjct: 95 ttgtgttctcaggtcacccctt 116
>48581_gma-miR398a:pmrd
Length = 116
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ttgtgttctcaggtcacccctt 67
||||||||||||||||||||||
Sbjct: 76 ttgtgttctcaggtcacccctt 97
>48391_bol-miR398a:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ttgtgttctcaggtcacccctt 67
||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctt 91
>48390_bol-miR398a:pmrd
Length = 95
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ttgtgttctcaggtcacccctt 67
||||||||||||||||||||||
Sbjct: 70 ttgtgttctcaggtcacccctt 91
>47012_ath-miR398a:pmrd
Length = 105
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ttgtgttctcaggtcacccctt 67
||||||||||||||||||||||
Sbjct: 74 ttgtgttctcaggtcacccctt 95
>46889_aqc-miR398a:pmrd
Length = 92
Score = 44.1 bits (22), Expect = 1e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 46 ttgtgttctcaggtcacccctt 67
||||||||||||||||||||||
Sbjct: 65 ttgtgttctcaggtcacccctt 86
>52988_ptc-miRf11166-akr:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcacccctt 67
|||||||||||||||||||||
Sbjct: 75 tgtgttctcaggtcacccctt 95
>51744_ptc-miR398a:pmrd
Length = 109
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcacccctt 67
|||||||||||||||||||||
Sbjct: 80 tgtgttctcaggtcacccctt 100
>48962_osa-miR398a:pmrd
Length = 115
Score = 42.1 bits (21), Expect = 5e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcacccctt 67
|||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccctt 105
>47014_ath-miR398c:pmrd
Length = 115
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcacccct 66
||||||||||||||||||||
Sbjct: 85 tgtgttctcaggtcacccct 104
>47013_ath-miR398b:pmrd
Length = 116
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 47 tgtgttctcaggtcacccct 66
||||||||||||||||||||
Sbjct: 86 tgtgttctcaggtcacccct 105
