miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46039_miR162:micropc
Length = 92
Score = 178 bits (90), Expect = 4e-46
Identities = 90/90 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaaca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaaca 61
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 62 catgaatcgatcgataaacctctgcatcca 91
>46511_miR162:micropc
Length = 89
Score = 123 bits (62), Expect = 2e-29
Identities = 84/90 (93%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaaca 60
|||||||||||||||||||||||||||||| || |||||||||||| | || |||||| |
Sbjct: 1 tggaggcagcggttcatcgatctcttcctg-agaattttgttgtgagaataacacaaata 59
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 60 catgaatcgatcgataaacctctgcatcca 89
>45545_miR162:micropc
Length = 91
Score = 123 bits (62), Expect = 2e-29
Identities = 84/90 (93%), Gaps = 1/90 (1%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcacaaaca 60
|||||||||||||||||||||||||||||| || |||||||||||| | || |||||| |
Sbjct: 2 tggaggcagcggttcatcgatctcttcctg-agaattttgttgtgagaataacacaaata 60
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 61 catgaatcgatcgataaacctctgcatcca 90
>46549_miR162:micropc
Length = 92
Score = 89.7 bits (45), Expect = 3e-19
Identities = 83/92 (90%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggaggatttt-gttgtgaaattagcac-aaa 58
||||||||||||||||||||||||||||||||| |||| ||| |||| | ||| |||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctggagattttttgttctgaact--gcaataaa 59
Query: 59 cacatgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||||
Sbjct: 60 cacatgaatcgatcgataaacctctgcatcca 91
>45903_miR162:micropc
Length = 90
Score = 89.7 bits (45), Expect = 3e-19
Identities = 83/92 (90%), Gaps = 4/92 (4%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggaggatttt-gttgtgaaattagcac-aaa 58
||||||||||||||||||||||||||||||||| |||| ||| |||| | ||| |||
Sbjct: 1 tggaggcagcggttcatcgatctcttcctggagattttttgttctgaact--gcaataaa 58
Query: 59 cacatgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||||
Sbjct: 59 cacatgaatcgatcgataaacctctgcatcca 90
>46456_miR162:micropc
Length = 89
Score = 73.8 bits (37), Expect = 2e-14
Identities = 79/90 (87%), Gaps = 6/90 (6%)
Strand = Plus / Plus
Query: 2 ggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-aaaca 60
|||||||||||||||||||||||||||||| ||||| |||| ||||||| ||| |
Sbjct: 4 ggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacgaaaaa 58
Query: 61 catgaatcgatcgataaacctctgcatcca 90
|||||| |||||||||||||||||||||||
Sbjct: 59 catgaaccgatcgataaacctctgcatcca 88
>45283_miR162:micropc
Length = 87
Score = 73.8 bits (37), Expect = 2e-14
Identities = 79/90 (87%), Gaps = 6/90 (6%)
Strand = Plus / Plus
Query: 2 ggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaattagcac-aaaca 60
|||||||||||||||||||||||||||||| ||||| |||| ||||||| ||| |
Sbjct: 3 ggaggcagcggttcatcgatctcttcctggccaatttt-ttgt----ttagcacgaaaaa 57
Query: 61 catgaatcgatcgataaacctctgcatcca 90
|||||| |||||||||||||||||||||||
Sbjct: 58 catgaaccgatcgataaacctctgcatcca 87
>46817_miR162:micropc
Length = 93
Score = 71.9 bits (36), Expect = 7e-14
Identities = 81/92 (88%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaat-tagcacaaac 59
|||||||||||||||||||||| ||| || | |||||||||||||| || ||||||
Sbjct: 2 tggaggcagcggttcatcgatcactttgtgcaa-attttgttgtgaaaaataacacaaaa 60
Query: 60 -acatgaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||||||
Sbjct: 61 tacatgaatcgatcgataaacctctgcatcca 92
>46597_miR162:micropc
Length = 91
Score = 71.9 bits (36), Expect = 7e-14
Identities = 81/92 (88%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctggaggattttgttgtgaaat-tagcacaaac 59
|||||||||||||||||||||| ||| || | |||||||||||||| || ||||||
Sbjct: 1 tggaggcagcggttcatcgatcactttgtgcaa-attttgttgtgaaaaataacacaaaa 59
Query: 60 -acatgaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||||||
Sbjct: 60 tacatgaatcgatcgataaacctctgcatcca 91
>46676_miR162:micropc
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 67 catgaatcgatcgataaacctctgcatcca 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatc 23
>46394_miR162:micropc
Length = 95
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 66 catgaatcgatcgataaacctctgcatcca 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatc 22
>46364_miR162:micropc
Length = 95
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 66 catgaatcgatcgataaacctctgcatcca 95
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatc 22
>46096_miR162:micropc
Length = 87
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctg 31
>45921_miR162:micropc
Length = 110
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatctcttcctg 31
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gatcgataaacctctgcatcca 90
||||||||||||||||||||||
Sbjct: 88 gatcgataaacctctgcatcca 109
>45508_miR162:micropc
Length = 108
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatctcttcctg 30
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 69 gatcgataaacctctgcatcca 90
||||||||||||||||||||||
Sbjct: 87 gatcgataaacctctgcatcca 108
>44934_miR162:micropc
Length = 97
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||||||||||||||||||||||||
Sbjct: 67 catgaatcgatcgataaacctctgcatcca 96
Score = 44.1 bits (22), Expect = 2e-05
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatc 22
||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatc 23
>44920_miR162:micropc
Length = 85
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatctcttcctg 30
>46557_miR162:micropc
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctg 30
>46457_miR162:micropc
Length = 109
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 83 gaatcgatcgataaacctctgcatcca 109
>46090_miR162:micropc
Length = 97
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 71 gaatcgatcgataaacctctgcatcca 97
>46026_miR162:micropc
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 60 acatgaatcgatcgataaacctctgcatcca 90
|||||||||| ||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatcca 86
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||| ||||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcctg 31
>45991_miR162:micropc
Length = 108
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 81 gaatcgatcgataaacctctgcatcca 107
>45901_miR162:micropc
Length = 111
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 84 gaatcgatcgataaacctctgcatcca 110
>45749_miR162:micropc
Length = 99
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatcca 98
>44845_miR162:micropc
Length = 106
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||||||||||||||||
Sbjct: 80 gaatcgatcgataaacctctgcatcca 106
>46792_miR162:micropc
Length = 83
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||||||||||
Sbjct: 1 tggatgcagcggttcatcgatctcttcctg 30
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 57 gaatcggtcgataaacctctgcatcca 83
>45757_miR162:micropc
Length = 86
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||| ||||||||||||||||||||
Sbjct: 57 catgaatcggtcgataaacctctgcatcca 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatct 23
|||||||||||||||||||||||
Sbjct: 1 tggaggcagcggttcatcgatct 23
>45617_miR162:micropc
Length = 88
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 61 catgaatcgatcgataaacctctgcatcca 90
||||||||| ||||||||||||||||||||
Sbjct: 58 catgaatcggtcgataaacctctgcatcca 87
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatct 23
|||||||||||||||||||||||
Sbjct: 2 tggaggcagcggttcatcgatct 24
>44984_miR162:micropc
Length = 85
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
|||| |||||||||||||||||||||||||
Sbjct: 2 tggatgcagcggttcatcgatctcttcctg 31
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 58 gaatcggtcgataaacctctgcatcca 84
>46628_miR162:micropc
Length = 136
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>46470_miR162:micropc
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>46169_miR162:micropc
Length = 136
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>45868_miR162:micropc
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>45605_miR162:micropc
Length = 135
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>45416_miR162:micropc
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 113 gaatcggtcgataaacctctgcatcca 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>45338_miR162:micropc
Length = 112
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||| ||||||||||||
Sbjct: 86 gaatcgatcgataagcctctgcatcca 112
>45279_miR162:micropc
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||||||||||| ||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatcca 113
>45197_miR162:micropc
Length = 139
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 113 gaatcggtcgataaacctctgcatcca 139
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcc 28
>45084_miR162:micropc
Length = 136
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 109 gaatcggtcgataaacctctgcatcca 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>44890_miR162:micropc
Length = 141
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 114 gaatcggtcgataaacctctgcatcca 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
>44807_miR162:micropc
Length = 141
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 64 gaatcgatcgataaacctctgcatcca 90
|||||| ||||||||||||||||||||
Sbjct: 114 gaatcggtcgataaacctctgcatcca 140
Score = 40.1 bits (20), Expect = 3e-04
Identities = 26/28 (92%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcc 28
|||| |||||||||||||||||| ||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcc 29
