miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48493_ghr-miR162a:pmrd
Length = 148
Score = 176 bits (89), Expect = 2e-45
Identities = 89/89 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaatac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaatac 84
Query: 61 atgaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||||
Sbjct: 85 atgaatcgatcgataaacctctgcatcca 113
>48423_cpa-miR162a:pmrd
Length = 109
Score = 89.7 bits (45), Expect = 3e-19
Identities = 81/89 (91%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaatac 60
|||||||||||||||||||||||||||||| ||| |||| ||||| || | |||| | ||
Sbjct: 14 tggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aaaatcacaga-ac 70
Query: 61 atgaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||||
Sbjct: 71 atgaatcgatcgataaacctctgcatcca 99
>54387_rco-miR162:pmrd
Length = 96
Score = 77.8 bits (39), Expect = 1e-15
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcct-gagaattttgttgtgaga-ataacacaaat 58
||||||||||||||||||||||||||||| || |||||||||||| | | || |||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataaaac 63
Query: 59 acatgaatcgatcgataaacctctgcatcca 89
||||||||||||||||||||||||||||||
Sbjct: 64 gcatgaatcgatcgataaacctctgcatcca 94
>52400_ptc-miRf10578-akr:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 94 tggaggcagcggttcatcgatctcttcctg 65
>52399_ptc-miRf10577-akr:pmrd
Length = 103
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 94 tggaggcagcggttcatcgatctcttcctg 65
>51616_ptc-miR162a:pmrd
Length = 107
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 12 tggaggcagcggttcatcgatctcttcctg 41
>48682_llu-miR162:pmrd
Length = 80
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 60 catgaatcgatcgataaacctctgcatcca 89
||||||||||||||||||||||||||||||
Sbjct: 50 catgaatcgatcgataaacctctgcatcca 79
>48545_gma-miR162a:pmrd
Length = 102
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 60 catgaatcgatcgataaacctctgcatcca 89
||||||||||||||||||||||||||||||
Sbjct: 63 catgaatcgatcgataaacctctgcatcca 92
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
|||| ||||||||||||||||||||||||||
Sbjct: 11 tggatgcagcggttcatcgatctcttcctga 41
>46937_ath-miR162a:pmrd
Length = 140
Score = 60.0 bits (30), Expect = 3e-10
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 26 tggaggcagcggttcatcgatctcttcctg 55
Score = 52.0 bits (26), Expect = 7e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 catgaatcgatcgataaacctctgcatcca 89
||||||| ||||||||||||||||||||||
Sbjct: 79 catgaatagatcgataaacctctgcatcca 108
>48690_mdo-miR162:pmrd
Length = 88
Score = 58.0 bits (29), Expect = 1e-09
Identities = 77/89 (86%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaatac 60
|||||||| |||||||||||||| || ||||| |||||||||||| | |||||| | |
Sbjct: 2 tggaggcatcggttcatcgatctgtttatgaga-ttttgttgtgagta-aacacagtt-c 58
Query: 61 atgaatcgatcgataaacctctgcatcca 89
|||||||| ||||||||||| ||||||||
Sbjct: 59 atgaatcggtcgataaacctttgcatcca 87
>54784_vvi-miR162:pmrd
Length = 103
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
|||| ||||||||||||||||||||||||||
Sbjct: 10 tggatgcagcggttcatcgatctcttcctga 40
>52498_ptc-miRf10676-akr:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
||||||||||||||||||||||| |||||||
Sbjct: 93 tggaggcagcggttcatcgatcttttcctga 63
>52497_ptc-miRf10675-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
||||||||||||||||||||||| |||||||
Sbjct: 95 tggaggcagcggttcatcgatcttttcctga 65
>52244_ptc-miRf10422-akr:pmrd
Length = 105
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
||||||||||||||||||||||| |||||||
Sbjct: 95 tggaggcagcggttcatcgatcttttcctga 65
>52243_ptc-miRf10421-akr:pmrd
Length = 101
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
||||||||||||||||||||||| |||||||
Sbjct: 93 tggaggcagcggttcatcgatcttttcctga 63
>51618_ptc-miR162c:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
||||||||||||||||||||||| |||||||
Sbjct: 12 tggaggcagcggttcatcgatcttttcctga 42
>51617_ptc-miR162b:pmrd
Length = 107
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
||||||||||||||||||||||| |||||||
Sbjct: 12 tggaggcagcggttcatcgatcttttcctga 42
>48834_osa-miR162a:pmrd
Length = 171
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||
Sbjct: 136 gaatcgatcgataaacctctgcatcca 162
>48707_mtr-miR162d:pmrd
Length = 87
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 acatgaatcgatcgataaacctctgcatcca 89
|||||||||| ||||||||||||||||||||
Sbjct: 56 acatgaatcggtcgataaacctctgcatcca 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
|||| |||||||||||||||||| |||||||
Sbjct: 2 tggatgcagcggttcatcgatctgttcctga 32
>48706_mtr-miR162c:pmrd
Length = 86
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 59 acatgaatcgatcgataaacctctgcatcca 89
|||||||||| ||||||||||||||||||||
Sbjct: 31 acatgaatcggtcgataaacctctgcatcca 1
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
|||| |||||||||||||||||| |||||||
Sbjct: 85 tggatgcagcggttcatcgatctgttcctga 55
>48705_mtr-miR162b:pmrd
Length = 85
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 acatgaatcgatcgataaacctctgcatcca 89
|||||||||| ||||||||||||||||||||
Sbjct: 55 acatgaatcggtcgataaacctctgcatcca 85
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
|||| |||||||||||||||||| |||||||
Sbjct: 1 tggatgcagcggttcatcgatctgttcctga 31
>47354_ath-miRf10254-akr:pmrd
Length = 115
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||
Sbjct: 42 gaatcgatcgataaacctctgcatcca 16
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Minus
Query: 1 tggaggcagcggttcatcgatctcttcctgagaat 35
|||||||||||||||||||||| |||||| ||||
Sbjct: 101 tggaggcagcggttcatcgatcaattcctgtgaat 67
>46938_ath-miR162b:pmrd
Length = 111
Score = 54.0 bits (27), Expect = 2e-08
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||
Sbjct: 72 gaatcgatcgataaacctctgcatcca 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgagaat 35
|||||||||||||||||||||| |||||| ||||
Sbjct: 13 tggaggcagcggttcatcgatcaattcctgtgaat 47
>54948_zma-miR162b:pmrd
Length = 130
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||| ||||||||||||||||||||
Sbjct: 103 gaatcggtcgataaacctctgcatcca 129
>54542_sly-miR162:pmrd
Length = 99
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||| ||||||||||||||||||||
Sbjct: 72 gaatcggtcgataaacctctgcatcca 98
>48836_osa-miR162m:pmrd
Length = 114
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||| ||||||||||||
Sbjct: 87 gaatcgatcgataagcctctgcatcca 113
>48835_osa-miR162b:pmrd
Length = 134
Score = 46.1 bits (23), Expect = 4e-06
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||| ||||||||||||
Sbjct: 97 gaatcgatcgataagcctctgcatcca 123
>48685_lsa-miR162:pmrd
Length = 89
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 tcgataaacctctgcatcca 89
||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatcca 20
>48546_gma-miR162m:pmrd
Length = 367
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 70 tcgataaacctctgcatcca 89
||||||||||||||||||||
Sbjct: 1 tcgataaacctctgcatcca 20
