miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 89.7 bits (45), Expect = 6e-18
Identities = 81/89 (91%), Gaps = 3/89 (3%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgagaattttgttgtgagaataacacaaatac 60
|||||||||||||||||||||||||||||| ||| |||| ||||| || | |||| | ||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctgggaa-tttggtgtga-aaaatcacaga-ac 60
Query: 61 atgaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||||
Sbjct: 61 atgaatcgatcgataaacctctgcatcca 89
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 77.8 bits (39), Expect = 2e-14
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcct-gagaattttgttgtgaga-ataacacaaat 58
||||||||||||||||||||||||||||| || |||||||||||| | | || |||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctggaagattttgttgtgaaacaaaaataaaac 63
Query: 59 acatgaatcgatcgataaacctctgcatcca 89
||||||||||||||||||||||||||||||
Sbjct: 64 gcatgaatcgatcgataaacctctgcatcca 94
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 60 catgaatcgatcgataaacctctgcatcca 89
||||||| ||||||||||||||||||||||
Sbjct: 57 catgaatagatcgataaacctctgcatcca 86
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 60.0 bits (30), Expect = 5e-09
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctg 30
||||||||||||||||||||||||||||||
Sbjct: 4 tggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||
Sbjct: 63 gaatcgatcgataaacctctgcatcca 89
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctgagaat 35
|||||||||||||||||||||| |||||| ||||
Sbjct: 4 tggaggcagcggttcatcgatcaattcctgtgaat 38
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
||||||||||||||||||||||| |||||||
Sbjct: 4 tggaggcagcggttcatcgatcttttcctga 34
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 59 acatgaatcgatcgataaacctctgcatcca 89
|||||||||| ||||||||||||||||||||
Sbjct: 58 acatgaatcggtcgataaacctctgcatcca 88
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
|||| |||||||||||||||||| |||||||
Sbjct: 4 tggatgcagcggttcatcgatctgttcctga 34
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctcttcctga 31
|||| ||||||||||||||||||||||||||
Sbjct: 4 tggatgcagcggttcatcgatctcttcctga 34
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatcca 130
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatcca 156
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatcca 157
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||| ||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatcca 131
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 63 gaatcgatcgataaacctctgcatcca 89
|||||||||||||| ||||||||||||
Sbjct: 89 gaatcgatcgataagcctctgcatcca 115
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 1 tggaggcagcggttcatcgatctctt 26
|||||||||||||| |||||||||||
Sbjct: 4 tggaggcagcggttgatcgatctctt 29
