miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>46603_miR806:micropc
Length = 188
Score = 373 bits (188), Expect = e-104
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 cgccgttgacattttaagcacatgtttgaccgttcgtcttattcaaaaaatttaagtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgccgttgacattttaagcacatgtttgaccgttcgtcttattcaaaaaatttaagtaat 60
Query: 61 tattaattcttttcctatcatttgattcattgttaaatatattttcatgcaggcatataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tattaattcttttcctatcatttgattcattgttaaatatattttcatgcaggcatataa 120
Query: 121 ttttacatatttcacaaaagtttttgaataagatgaacggttaaatatgtgctaaaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttacatatttcacaaaagtttttgaataagatgaacggttaaatatgtgctaaaaagt 180
Query: 181 caacggtg 188
||||||||
Sbjct: 181 caacggtg 188
Score = 46.1 bits (23), Expect = 1e-05
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 141 tttttgaataagatgaacggttaaatatgtgc-taaaaagtcaacgg 186
||||||||||||| ||||||| ||| |||||| ||||| ||||||||
Sbjct: 49 tttttgaataagacgaacggtcaaacatgtgcttaaaatgtcaacgg 3
Score = 46.1 bits (23), Expect = 1e-05
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 3 ccgttgacattttaagcacatgtttgaccgttcgtcttattcaaaaa 49
|||||||| ||||| |||||| ||| ||||||| |||||||||||||
Sbjct: 186 ccgttgacttttta-gcacatatttaaccgttcatcttattcaaaaa 141
>45954_miR806:micropc
Length = 188
Score = 373 bits (188), Expect = e-104
Identities = 188/188 (100%)
Strand = Plus / Plus
Query: 1 cgccgttgacattttaagcacatgtttgaccgttcgtcttattcaaaaaatttaagtaat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 cgccgttgacattttaagcacatgtttgaccgttcgtcttattcaaaaaatttaagtaat 60
Query: 61 tattaattcttttcctatcatttgattcattgttaaatatattttcatgcaggcatataa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tattaattcttttcctatcatttgattcattgttaaatatattttcatgcaggcatataa 120
Query: 121 ttttacatatttcacaaaagtttttgaataagatgaacggttaaatatgtgctaaaaagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 ttttacatatttcacaaaagtttttgaataagatgaacggttaaatatgtgctaaaaagt 180
Query: 181 caacggtg 188
||||||||
Sbjct: 181 caacggtg 188
Score = 46.1 bits (23), Expect = 1e-05
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 141 tttttgaataagatgaacggttaaatatgtgc-taaaaagtcaacgg 186
||||||||||||| ||||||| ||| |||||| ||||| ||||||||
Sbjct: 49 tttttgaataagacgaacggtcaaacatgtgcttaaaatgtcaacgg 3
Score = 46.1 bits (23), Expect = 1e-05
Identities = 42/47 (89%), Gaps = 1/47 (2%)
Strand = Plus / Minus
Query: 3 ccgttgacattttaagcacatgtttgaccgttcgtcttattcaaaaa 49
|||||||| ||||| |||||| ||| ||||||| |||||||||||||
Sbjct: 186 ccgttgacttttta-gcacatatttaaccgttcatcttattcaaaaa 141
>46748_miR806:micropc
Length = 187
Score = 202 bits (102), Expect = 7e-53
Identities = 150/166 (90%)
Strand = Plus / Minus
Query: 12 ttttaagcacatgtttgaccgttcgtcttattcaaaaaatttaagtaattattaattctt 71
|||| |||||||||||||||| |||||||||||||||||||||| ||||||||| || ||
Sbjct: 177 tttttagcacatgtttgaccgctcgtcttattcaaaaaatttaaataattattatttttt 118
Query: 72 ttcctatcatttgattcattgttaaatatattttcatgcaggcatataattttacatatt 131
||||||| |||||||||||||||||||||| ||| ||||| | |||| |||||||||||
Sbjct: 117 ttcctataatttgattcattgttaaatatacttttatgcatacgtatagttttacatatt 58
Query: 132 tcacaaaagtttttgaataagatgaacggttaaatatgtgctaaaa 177
| |||||||||||||||||||||||||||| ||| ||||| |||||
Sbjct: 57 ttacaaaagtttttgaataagatgaacggtcaaacatgtgttaaaa 12
Score = 56.0 bits (28), Expect = 1e-08
Identities = 43/48 (89%)
Strand = Plus / Plus
Query: 141 tttttgaataagatgaacggttaaatatgtgctaaaaagtcaacggtg 188
||||||||||||| || |||| ||| ||||||||||||||||| ||||
Sbjct: 140 tttttgaataagacgagcggtcaaacatgtgctaaaaagtcaatggtg 187
Score = 54.0 bits (27), Expect = 4e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 19 cacatgtttgaccgttcgtcttattcaaaaa 49
||||||||||||||||| |||||||||||||
Sbjct: 18 cacatgtttgaccgttcatcttattcaaaaa 48
>46381_miR1884:micropc
Length = 204
Score = 40.1 bits (20), Expect = 6e-04
Identities = 23/24 (95%)
Strand = Plus / Minus
Query: 25 tttgaccgttcgtcttattcaaaa 48
||||||| ||||||||||||||||
Sbjct: 172 tttgaccattcgtcttattcaaaa 149
