miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48500_ghr-miR390c:pmrd
Length = 114
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 70
Query: 61 atttgatcctcatatagcgctatccatcctgagttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 71 atttgatcctcatatagcgctatccatcctgagttt 106
>48499_ghr-miR390b:pmrd
Length = 132
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 77
Query: 61 atttgatcctcatatagcgctatccatcctgagttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 78 atttgatcctcatatagcgctatccatcctgagttt 113
>48498_ghr-miR390a:pmrd
Length = 124
Score = 190 bits (96), Expect = 1e-49
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatggatgatccatctttcaagctttcatgcatgtatgtt 74
Query: 61 atttgatcctcatatagcgctatccatcctgagttt 96
||||||||||||||||||||||||||||||||||||
Sbjct: 75 atttgatcctcatatagcgctatccatcctgagttt 110
>46996_ath-miR390b:pmrd
Length = 120
Score = 50.1 bits (25), Expect = 3e-07
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatgg 25
|||||||||||||||||||||||||
Sbjct: 15 aagctcaggagggatagcgccatgg 39
>54848_vvi-miR390:pmrd
Length = 140
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>52711_ptc-miRf10889-akr:pmrd
Length = 127
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 14 aagctcaggagggatagcgccatg 37
>51718_ptc-miR390c:pmrd
Length = 123
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>51716_ptc-miR390a:pmrd
Length = 119
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgccatg 34
>48372_bna-miR390c:pmrd
Length = 128
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 23 aagctcaggagggatagcgccatg 46
>48370_bna-miR390a:pmrd
Length = 144
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 33 aagctcaggagggatagcgccatg 56
>47212_ath-miRf10112-akr:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagttt 88
>47211_ath-miRf10111-akr:pmrd
Length = 71
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccatg 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 52 gcgctatccatcctgagttt 71
>46995_ath-miR390a:pmrd
Length = 107
Score = 48.1 bits (24), Expect = 1e-06
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccatg 24
||||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccatg 41
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 69 gcgctatccatcctgagttt 88
>51391_ppt-miR390a:pmrd
Length = 137
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 16 aagctcaggagggatagcgccat 38
>48729_mtr-miR390:pmrd
Length = 90
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgccat 23
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 71 gcgctatccatcctgagttt 90
>48371_bna-miR390b:pmrd
Length = 105
Score = 46.1 bits (23), Expect = 5e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgccat 23
|||||||||||||||||||||||
Sbjct: 18 aagctcaggagggatagcgccat 40
>55055_zma-miR390:pmrd
Length = 177
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 1 aagctcaggagggatagcgcc 21
>53138_ptc-miRf11316-akr:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 4 aagctcaggagggatagcgcc 24
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 72 gcgctatccatcctgagttt 91
>51719_ptc-miR390d:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>51717_ptc-miR390b:pmrd
Length = 106
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 11 aagctcaggagggatagcgcc 31
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 77 gcgctatccatcctgagttt 96
||||||||||||||||||||
Sbjct: 79 gcgctatccatcctgagttt 98
>51392_ppt-miR390b:pmrd
Length = 175
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 28 aagctcaggagggatagcgcc 48
>48916_osa-miR390:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 7e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 aagctcaggagggatagcgcc 21
|||||||||||||||||||||
Sbjct: 19 aagctcaggagggatagcgcc 39
>51394_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgcc 21
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
>51393_ppt-miR390c:pmrd
Length = 135
Score = 40.1 bits (20), Expect = 3e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 2 agctcaggagggatagcgcc 21
||||||||||||||||||||
Sbjct: 14 agctcaggagggatagcgcc 33
