miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>48642_han-miR157a:pmrd
Length = 86
Score = 167 bits (84), Expect = 2e-42
Identities = 84/84 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacagagaagcatgaattgcacatagatattgcaattcactcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcacagagaagcatgaattgcacatagatattgcaattcactcc 61
Query: 61 ttcgtgctctctatgcttctgtca 84
||||||||||||||||||||||||
Sbjct: 62 ttcgtgctctctatgcttctgtca 85
>48695_mtr-miR156e:pmrd
Length = 172
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 tcactccttcgtgctctctatgcttctgtca 84
||||||||| |||||||||||||||||||||
Sbjct: 137 tcactcctttgtgctctctatgcttctgtca 167
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcacaga 29
>46862_aqc-miR156b:pmrd
Length = 83
Score = 54.0 bits (27), Expect = 2e-08
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 54 tcactccttcgtgctctctatgcttctgtca 84
||||||||| |||||||||||||||||||||
Sbjct: 51 tcactcctttgtgctctctatgcttctgtca 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacaga 23
>52045_ptc-miRf10223-akr:pmrd
Length = 86
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 cactccttcgtgctctctatgcttctgtca 84
|||||||| |||||||||||||||||||||
Sbjct: 54 cactcctttgtgctctctatgcttctgtca 83
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 4 tgacagaagatagagagcacaga 26
>51600_ptc-miR156j:pmrd
Length = 100
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 cactccttcgtgctctctatgcttctgtca 84
|||||||| |||||||||||||||||||||
Sbjct: 62 cactcctttgtgctctctatgcttctgtca 91
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
>48631_gra-miR157b:pmrd
Length = 91
Score = 52.0 bits (26), Expect = 6e-08
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 55 cactccttcgtgctctctatgcttctgtca 84
|||||||| |||||||||||||||||||||
Sbjct: 57 cactcctttgtgctctctatgcttctgtca 86
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 6 tgacagaagatagagagcacaga 28
>51599_ptc-miR156i:pmrd
Length = 99
Score = 48.1 bits (24), Expect = 1e-06
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 54 tcactccttcgtgctctctatgcttctg 81
||||||||| ||||||||||||||||||
Sbjct: 61 tcactcctttgtgctctctatgcttctg 88
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
>54774_vvi-miR156i:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
Score = 46.1 bits (23), Expect = 4e-06
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 tcactccttcgtgctctctatgcttctgtca 84
||||||||| ||||||||||| |||||||||
Sbjct: 60 tcactcctttgtgctctctattcttctgtca 90
>54772_vvi-miR156g:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
>54570_smo-miR156b:pmrd
Length = 112
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
Score = 40.1 bits (20), Expect = 2e-04
Identities = 23/24 (95%)
Strand = Plus / Plus
Query: 61 ttcgtgctctctatgcttctgtca 84
|||||||||||||| |||||||||
Sbjct: 77 ttcgtgctctctattcttctgtca 100
>51597_ptc-miR156g:pmrd
Length = 103
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcacaga 34
>48790_nta-miR157:pmrd
Length = 131
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcacaga 24
>48697_mtr-miR156h:pmrd
Length = 94
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcacaga 29
>48630_gra-miR157a:pmrd
Length = 101
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 6 tgacagaagatagagagcacaga 28
Score = 44.1 bits (22), Expect = 2e-05
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 cactccttcgtgctctctatgcttctgtca 84
|||||||| ||||||| |||||||||||||
Sbjct: 67 cactcctttgtgctctttatgcttctgtca 96
>48531_gma-miR156d:pmrd
Length = 151
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcacaga 44
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 actccttcgtgctctctatgcttctgtca 84
||||||| ||||||||||| |||||||||
Sbjct: 103 actcctttgtgctctctatacttctgtca 131
>46925_ath-miR157b:pmrd
Length = 132
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 20 tgacagaagatagagagcacaga 42
>46924_ath-miR157a:pmrd
Length = 98
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 5 tgacagaagatagagagcacaga 27
>46861_aqc-miR156a:pmrd
Length = 81
Score = 46.1 bits (23), Expect = 4e-06
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcacaga 23
|||||||||||||||||||||||
Sbjct: 1 tgacagaagatagagagcacaga 23
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 gtgctctctatgcttctgtca 84
|||||||||||||||||||||
Sbjct: 59 gtgctctctatgcttctgtca 79
>54771_vvi-miR156f:pmrd
Length = 105
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcaca 32
>54661_stu-miR157a:pmrd
Length = 91
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 gtgctctctatgcttctgtca 84
|||||||||||||||||||||
Sbjct: 70 gtgctctctatgcttctgtca 90
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>54532_sly-miR156a:pmrd
Length = 100
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 gtgctctctatgcttctgtca 84
|||||||||||||||||||||
Sbjct: 79 gtgctctctatgcttctgtca 99
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>51552_pta-miR156b:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>51551_pta-miR156a:pmrd
Length = 83
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcaca 23
>48696_mtr-miR156f:pmrd
Length = 94
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcaca 27
>48675_lja-miR157a:pmrd
Length = 58
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcaca 22
>48530_gma-miR156c:pmrd
Length = 185
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcaca 21
|||||||||||||||||||||
Sbjct: 147 tgacagaagatagagagcaca 167
>48393_bra-miR157a:pmrd
Length = 149
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 actccttcgtgctctctatgcttctgtca 84
|||| |||||||||||||| |||||||||
Sbjct: 111 actctttcgtgctctctatacttctgtca 139
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 15 tgacagaagatagagagcac 34
>48337_bna-miR156b:pmrd
Length = 208
Score = 42.1 bits (21), Expect = 6e-05
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 56 actccttcgtgctctctatgcttctgtca 84
|||| |||||||||||||| |||||||||
Sbjct: 150 actctttcgtgctctctatacttctgtca 178
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 26 tgacagaagatagagagcac 45
>46927_ath-miR157d:pmrd
Length = 221
Score = 42.1 bits (21), Expect = 6e-05
Identities = 21/21 (100%)
Strand = Plus / Plus
Query: 64 gtgctctctatgcttctgtca 84
|||||||||||||||||||||
Sbjct: 173 gtgctctctatgcttctgtca 193
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 24 tgacagaagatagagagcac 43
>54534_sly-miR156c:pmrd
Length = 83
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>54533_sly-miR156b:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 2 tgacagaagatagagagcac 21
>52807_ptc-miRf10985-akr:pmrd
Length = 87
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 3 tgacagaagatagagagcac 22
>51598_ptc-miR156h:pmrd
Length = 103
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 12 tgacagaagatagagagcac 31
>48537_gma-miR157c:pmrd
Length = 84
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Minus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 83 tgacagaagatagagagcac 64
>48532_gma-miR156e:pmrd
Length = 124
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 22 tgacagaagatagagagcac 41
>48384_bol-miR157a:pmrd
Length = 106
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 7 tgacagaagatagagagcac 26
>48338_bna-miR156c:pmrd
Length = 155
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 19 tgacagaagatagagagcac 38
>46926_ath-miR157c:pmrd
Length = 217
Score = 40.1 bits (20), Expect = 2e-04
Identities = 20/20 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagcac 20
||||||||||||||||||||
Sbjct: 25 tgacagaagatagagagcac 44
>54537_sly-miR157c:pmrd
Length = 123
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagca 19
|||||||||||||||||||
Sbjct: 104 tgacagaagatagagagca 122
>54536_sly-miR157b:pmrd
Length = 430
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagca 19
|||||||||||||||||||
Sbjct: 2 tgacagaagatagagagca 20
>54535_sly-miR157a:pmrd
Length = 53
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagca 19
|||||||||||||||||||
Sbjct: 2 tgacagaagatagagagca 20
>51323_pco-miR157:pmrd
Length = 184
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagca 19
|||||||||||||||||||
Sbjct: 2 tgacagaagatagagagca 20
>48677_lja-miR157c:pmrd
Length = 460
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagca 19
|||||||||||||||||||
Sbjct: 2 tgacagaagatagagagca 20
>48670_ini-miR157b:pmrd
Length = 183
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagca 19
|||||||||||||||||||
Sbjct: 2 tgacagaagatagagagca 20
>48669_ini-miR157a:pmrd
Length = 126
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagca 19
|||||||||||||||||||
Sbjct: 2 tgacagaagatagagagca 20
>48668_iba-miR157:pmrd
Length = 283
Score = 38.2 bits (19), Expect = 0.001
Identities = 19/19 (100%)
Strand = Plus / Plus
Query: 1 tgacagaagatagagagca 19
|||||||||||||||||||
Sbjct: 2 tgacagaagatagagagca 20
